Suppr超能文献

Iris:交互式一体化图形验证 3D 蛋白质模型迭代。

Iris: Interactive all-in-one graphical validation of 3D protein model iterations.

机构信息

Department of Chemistry, York Structural Biology Laboratory, University of York, York, UK.

出版信息

Protein Sci. 2021 Jan;30(1):93-107. doi: 10.1002/pro.3955. Epub 2020 Oct 19.

Abstract

Iris validation is a Python package created to represent comprehensive per-residue validation metrics for entire protein chains in a compact, readable and interactive view. These metrics can either be calculated by Iris, or by a third-party program such as MolProbity. We show that those parts of a protein model requiring attention may generate ripples across the metrics on the diagram, immediately catching the modeler's attention. Iris can run as a standalone tool, or be plugged into existing structural biology software to display per-chain model quality at a glance, with a particular emphasis on evaluating incremental changes resulting from the iterative nature of model building and refinement. Finally, the integration of Iris into the CCP4i2 graphical user interface is provided as a showcase of its pluggable design.

摘要

Iris 验证是一个 Python 包,用于以简洁、可读和交互的方式表示整个蛋白质链的全面残基验证指标。这些指标可以由 Iris 计算,也可以由第三方程序(如 MolProbity)计算。我们表明,蛋白质模型中需要注意的部分可能会在图表上的指标中产生波动,立即引起建模者的注意。Iris 可以作为独立工具运行,也可以插入到现有的结构生物学软件中,以便一目了然地显示每链模型的质量,特别强调评估由于模型构建和细化的迭代性质而导致的增量变化。最后,将 Iris 集成到 CCP4i2 图形用户界面中,展示了其可插拔设计。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2b8/7737763/441f1505c559/PRO-30-93-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验