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新因素增强类似无规卷曲结构中半胱氨酸的反应活性。

New Factors Enhancing the Reactivity of Cysteines in Molten Globule-Like Structures.

机构信息

Department of Chemical Sciences and Technologies, University of Rome "Tor Vergata", 00133 Rome, Italy.

出版信息

Int J Mol Sci. 2020 Sep 22;21(18):6949. doi: 10.3390/ijms21186949.


DOI:10.3390/ijms21186949
PMID:32971812
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7555924/
Abstract

Protein cysteines often play crucial functional and structural roles, so they are emerging targets to design covalent thiol ligands that are able to modulate enzyme or protein functions. Some of these residues, especially those involved in enzyme mechanisms-including nucleophilic and reductive catalysis and thiol-disulfide exchange-display unusual hyper-reactivity; such a property is expected to result from a low p and from a great accessibility to a given reagent. New findings and previous evidence clearly indicate that p perturbations can only produce two-four-times increased reactivity at physiological pH values, far from the hundred and even thousand-times kinetic enhancements observed for some protein cysteines. The data from the molten globule-like structures of ribonuclease, lysozyme, bovine serum albumin and chymotrypsinogen identified new speeding agents, i.e., hydrophobic/electrostatic interactions and productive complex formations involving the protein and thiol reagent, which were able to confer exceptional reactivity to structural cysteines which were only intended to form disulfides. This study, for the first time, evaluates quantitatively the different contributions of p and other factors to the overall reactivity. These findings may help to clarify the mechanisms that allow a rapid disulfide formation during the oxidative folding of many proteins.

摘要

蛋白质半胱氨酸通常具有至关重要的功能和结构作用,因此它们成为设计能够调节酶或蛋白质功能的共价硫醇配体的新兴目标。这些残基中的一些,特别是那些参与酶机制的残基——包括亲核和还原催化以及硫醇-二硫键交换——表现出异常的高反应性;这种性质预计是由于低 p 值和对给定试剂的高可及性所致。新发现和以前的证据清楚地表明,p 值的干扰只能在生理 pH 值下产生两到四倍的反应性增加,远远低于一些蛋白质半胱氨酸观察到的数百甚至数千倍的动力学增强。来自核糖核酸酶、溶菌酶、牛血清白蛋白和糜蛋白酶原的类玻璃态球蛋白结构的数据确定了新的加速剂,即疏水性/静电相互作用和涉及蛋白质和硫醇试剂的产生活性复合物的形成,这些加速剂能够赋予结构半胱氨酸异常的反应性,而这些半胱氨酸原本仅打算形成二硫键。这项研究首次定量评估了 p 值和其他因素对整体反应性的不同贡献。这些发现可能有助于阐明允许许多蛋白质在氧化折叠过程中快速形成二硫键的机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/ef791645dea6/ijms-21-06949-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/796df77cbb11/ijms-21-06949-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/ca609ee991ed/ijms-21-06949-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/a1a74e42f5aa/ijms-21-06949-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/1c2c64dc6ed8/ijms-21-06949-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/7a70270b1e26/ijms-21-06949-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/9c59eea2349c/ijms-21-06949-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/ef791645dea6/ijms-21-06949-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/796df77cbb11/ijms-21-06949-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/ca609ee991ed/ijms-21-06949-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/a1a74e42f5aa/ijms-21-06949-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/1c2c64dc6ed8/ijms-21-06949-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/7a70270b1e26/ijms-21-06949-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/9c59eea2349c/ijms-21-06949-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a03c/7555924/ef791645dea6/ijms-21-06949-g007.jpg

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[1]
New Factors Enhancing the Reactivity of Cysteines in Molten Globule-Like Structures.

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[2]
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[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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引用本文的文献

[1]
The unusual properties of lactoferrin during its nascent phase.

Sci Rep. 2023-8-29

[2]
Cysteine Oxidation in Proteins: Structure, Biophysics, and Simulation.

Biochemistry. 2022-10-18

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Chemical zymogens for the protein cysteinome.

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[4]
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[5]
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[7]
Oxidative Folding of Proteins: The "Smoking Gun" of Glutathione.

Int J Mol Sci. 2021-9-20

本文引用的文献

[1]
Ultra-rapid glutathionylation of chymotrypsinogen in its molten globule-like conformation: A comparison to archaeal proteins.

Sci Rep. 2020-6-2

[2]
Ultra-Rapid Glutathionylation of Ribonuclease: Is this the Real Incipit of its Oxidative Folding?

Int J Mol Sci. 2019-10-31

[3]
Reactive-cysteine profiling for drug discovery.

Curr Opin Chem Biol. 2019-3-18

[4]
The extreme hyper-reactivity of Cys94 in lysozyme avoids its amorphous aggregation.

Sci Rep. 2018-10-30

[5]
BeStSel: a web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra.

Nucleic Acids Res. 2018-7-2

[6]
Features of reactive cysteines discovered through computation: from kinase inhibition to enrichment around protein degrons.

Sci Rep. 2017-11-27

[7]
The extreme hyper-reactivity of selected cysteines drives hierarchical disulfide bond formation in serum albumin.

FEBS J. 2016-11

[8]
The basics of thiols and cysteines in redox biology and chemistry.

Free Radic Biol Med. 2015-3

[9]
AZD9291, an irreversible EGFR TKI, overcomes T790M-mediated resistance to EGFR inhibitors in lung cancer.

Cancer Discov. 2014-9

[10]
Kinetics and mechanisms of thiol-disulfide exchange covering direct substitution and thiol oxidation-mediated pathways.

Antioxid Redox Signal. 2013-1-9

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