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构建细胞的路线图:一种进化方法。

Roadmap to Building a Cell: An Evolutionary Approach.

作者信息

Abil Zhanar, Danelon Christophe

机构信息

Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, Netherlands.

出版信息

Front Bioeng Biotechnol. 2020 Aug 19;8:927. doi: 10.3389/fbioe.2020.00927. eCollection 2020.

DOI:10.3389/fbioe.2020.00927
PMID:32974299
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7466671/
Abstract

Laboratory synthesis of an elementary biological cell from isolated components may aid in understanding of the fundamental principles of life and will provide a platform for a range of bioengineering and medical applications. In essence, building a cell consists in the integration of cellular modules into system's level functionalities satisfying definition of life. To achieve this goal, we propose in this perspective to undertake a semi-rational, system's level evolutionary approach. The strategy would require iterative cycles of genetic integration of functional modules, diversification of hereditary information, compartmentalized gene expression, selection/screening, and possibly, assistance from open-ended evolution. We explore the underlying challenges to each of these steps and discuss possible solutions toward the bottom-up construction of an artificial living cell.

摘要

从分离的组件在实验室中合成基本生物细胞,可能有助于理解生命的基本原理,并将为一系列生物工程和医学应用提供一个平台。从本质上讲,构建一个细胞在于将细胞模块整合到满足生命定义的系统级功能中。为实现这一目标,我们在此提出采用一种半理性的、系统级的进化方法。该策略将需要功能模块的遗传整合、遗传信息的多样化、分隔的基因表达、选择/筛选的迭代循环,并且可能需要开放式进化的协助。我们探讨了这些步骤中每一步所面临的潜在挑战,并讨论了自下而上构建人工活细胞的可能解决方案。

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本文引用的文献

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The long journey towards standards for engineering biosystems: Are the Molecular Biology and the Biotech communities ready to standardise?迈向工程生物系统标准的漫漫征途:分子生物学和生物技术界是否已准备好标准化?
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Efficient, continuous mutagenesis in human cells using a pseudo-random DNA editor.利用伪随机 DNA 编辑器在人细胞中进行高效、连续的诱变。
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Building Synthetic Cells─From the Technology Infrastructure to Cellular Entities.构建合成细胞─从技术基础设施到细胞实体。
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Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting.使用配对细胞修复对单细胞显微镜图像进行无监督特征表示学习。
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Evolutionary Innovations and Where to Find Them: Routes to Open-Ended Evolution in Natural and Artificial Systems.进化创新与发现之处:自然与人工系统中开放式进化的途径。
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