Universität Hamburg, ZBH - Center for Bioinformatics, Bundesstraße 43, 20146, Hamburg, Germany.
Mol Inform. 2020 Dec;39(12):e2000216. doi: 10.1002/minf.202000216. Epub 2020 Oct 8.
The number of publications concerning Pan-Assay Interference Compounds and related problematic structural motifs in screening libraries is constantly growing. In consequence, filter collections are merged, extended but also critically discussed. Due to the complexity of the chemical pattern language SMARTS, an easy-to-use toolbox enabling every chemist to understand, design and modify chemical patterns is urgently needed. Over the past decade, we developed a series of software tools for visualizing, editing, creating, and analysing chemical patterns. Herein, we highlight how most of these tools can now be easily used as part of the novel SMARTS.plus web server (https://smarts.plus/). As a showcase, we demonstrate how researchers can apply the web server tools within minutes to derive novel SMARTS patterns for the filtering of frequent hitters from their screening libraries with only a little experience with the SMARTS language.
有关泛分析干扰化合物(Pan-Assay Interference Compounds)及其在筛选库中相关问题结构基序的出版物数量在不断增加。因此,筛选库的过滤集合被合并、扩展,同时也受到了严格的讨论。由于 SMARTS 化学模式语言的复杂性,我们迫切需要一个易于使用的工具箱,使每个化学家都能够理解、设计和修改化学模式。在过去的十年中,我们开发了一系列用于可视化、编辑、创建和分析化学模式的软件工具。在此,我们强调了现在如何将这些工具中的大多数作为新型 SMARTS.plus 网络服务器(https://smarts.plus/)的一部分轻松使用。作为一个展示,我们演示了研究人员如何在几分钟内应用网络服务器工具,根据他们的筛选库中的频繁命中化合物,为其推导新的 SMARTS 模式,而只需对 SMARTS 语言有一点经验。