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大麦ABC基因的全基因组鉴定及其对非生物胁迫处理的响应表达

Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment.

作者信息

Zhang Ziling, Tong Tao, Fang Yunxia, Zheng Junjun, Zhang Xian, Niu Chunyu, Li Jia, Zhang Xiaoqin, Xue Dawei

机构信息

College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China.

出版信息

Plants (Basel). 2020 Sep 28;9(10):1281. doi: 10.3390/plants9101281.

Abstract

Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA-ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley.

摘要

三磷酸腺苷结合盒转运蛋白(ABC转运蛋白)参与植物的各种生长过程和非生物胁迫反应。在本研究中,利用生物信息学方法系统鉴定了大麦中的131个ABC基因。基于水稻中该家族的分类方法,这些成员被分为八个亚家族(ABCA - ABCG,ABCI)。对这些基因的保守结构域、氨基酸组成、理化性质、染色体分布和组织表达进行了预测和分析。结果表明,大麦ABC基因的特征基序高度保守,跨膜结构域的同源性、外显子数量、氨基酸长度和分子量存在很大差异,而异电点范围较小。组织表达谱分析表明,ABC基因具有非组织特异性。最终,15个差异表达基因对干旱、镉和盐胁迫等胁迫处理表现出不同的表达反应,表明ABCB和ABCG亚家族在大麦对非生物胁迫的反应中发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5814/7599588/6c4e487f5a02/plants-09-01281-g001.jpg

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