Soubias Olivier, Pant Shashank, Heinrich Frank, Zhang Yue, Roy Neeladri Sekhar, Li Jess, Jian Xiaoying, Yohe Marielle E, Randazzo Paul A, Lösche Mathias, Tajkhorshid Emad, Byrd R Andrew
Structural Biophysics Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702-1201, USA.
NIH Center for Macromolecular Modeling and Bioinformatics, Beckman Institute for Advanced Science and Technology, Department of Biochemistry, Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Sci Adv. 2020 Sep 30;6(40). doi: 10.1126/sciadv.abd1882. Print 2020 Sep.
Adenosine diphosphate-ribosylation factor (Arf) guanosine triphosphatase-activating proteins (GAPs) are enzymes that need to bind to membranes to catalyze the hydrolysis of guanosine triphosphate (GTP) bound to the small GTP-binding protein Arf. Binding of the pleckstrin homology (PH) domain of the ArfGAP With SH3 domain, ankyrin repeat and PH domain 1 (ASAP1) to membranes containing phosphatidylinositol 4,5-bisphosphate [PI(4,5)P] is key for maximum GTP hydrolysis but not fully understood. By combining nuclear magnetic resonance, neutron reflectometry, and molecular dynamics simulation, we show that binding of multiple PI(4,5)P molecules to the ASAP1 PH domain (i) triggers a functionally relevant allosteric conformational switch and (ii) maintains the PH domain in a well-defined orientation, allowing critical contacts with an Arf1 mimic to occur. Our model provides a framework to understand how binding of the ASAP1 PH domain to PI(4,5)P at the membrane may play a role in the regulation of ASAP1.
二磷酸腺苷核糖基化因子(Arf)鸟苷三磷酸酶激活蛋白(GAPs)是一类酶,它们需要与膜结合以催化与小GTP结合蛋白Arf结合的鸟苷三磷酸(GTP)的水解。ArfGAP与SH3结构域、锚蛋白重复序列和PH结构域1(ASAP1)的pleckstrin同源(PH)结构域与含有磷脂酰肌醇4,5-二磷酸[PI(4,5)P]的膜的结合是最大程度GTP水解的关键,但尚未完全了解。通过结合核磁共振、中子反射率和分子动力学模拟,我们表明多个PI(4,5)P分子与ASAP1 PH结构域的结合(i)触发了功能相关的变构构象转换,并且(ii)将PH结构域维持在明确的方向,从而允许与Arf1模拟物发生关键接触。我们的模型提供了一个框架,以理解ASAP1 PH结构域在膜上与PI(4,5)P的结合如何可能在ASAP1的调节中发挥作用。