Rabinowitz Tom, Shomron Noam
Faculty of Medicine and Edmond J Safra Center for Bioinformatics, Tel Aviv University, Tel Aviv 69978, Israel.
Comput Struct Biotechnol J. 2020 Sep 14;18:2463-2470. doi: 10.1016/j.csbj.2020.09.003. eCollection 2020.
Noninvasive prenatal diagnosis (NIPD) is a risk-free alternative to invasive methods for prenatal diagnosis, e.g. amniocentesis. NIPD is based on the presence of fetal DNA within the mother's plasma cell-free DNA (cfDNA). Though currently available for various monogenic diseases through detection of point mutations, NIPD is limited to detecting one mutation or up to several genes simultaneously. Noninvasive prenatal whole exome/genome sequencing (WES/WGS) has demonstrated genome-wide detection of fetal point mutations in a few studies. However, Genome-wide NIPD of monogenic disorders currently has several challenges and limitations, mainly due to the small amounts of cfDNA and fetal-derived fragments, and the deep coverage required. Several approaches have been suggested for addressing these hurdles, based on various technologies and algorithms. The first relevant software tool, , recently became available. Here we review the approaches proposed and the paths required to make genome-wide monogenic NIPD widely available in the clinic.
非侵入性产前诊断(NIPD)是一种用于产前诊断的侵入性方法(如羊膜穿刺术)的无风险替代方法。NIPD基于母亲血浆游离DNA(cfDNA)中存在胎儿DNA。尽管目前通过检测点突变可用于各种单基因疾病,但NIPD仅限于同时检测一个突变或多达几个基因。在一些研究中,非侵入性产前全外显子组/基因组测序(WES/WGS)已证明可在全基因组范围内检测胎儿点突变。然而,目前单基因疾病的全基因组NIPD存在若干挑战和局限性,主要是由于cfDNA和胎儿来源片段的量少,以及所需的深度覆盖。基于各种技术和算法,已提出了几种方法来克服这些障碍。第一个相关软件工具最近已可用。在此,我们回顾所提出的方法以及使全基因组单基因NIPD在临床上广泛可用所需的途径。