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酿酒酵母谷氨酰胺tRNA合成酶氨基末端延伸缺失的构建与分析

Construction and analysis of deletions in the amino-terminal extension of glutamine tRNA synthetase of Saccharomyces cerevisiae.

作者信息

Ludmerer S W, Schimmel P

出版信息

J Biol Chem. 1987 Aug 5;262(22):10807-13.

PMID:3301842
Abstract

GLN4 of Saccharomyces cerevisiae encodes an amino-terminal extension of 224 amino acids. This is connected to a polypeptide which is colinear with and 40% identical to Escherichia coli glutamine tRNA synthetase. We examined the potential significance of the amino-terminal extension. Two single base and five multiple base frame shift deletions were constructed in this segment. Each of these mutations is associated with a lethal phenotype. This suggests that the coding sequence for the amino-terminal extension is translated. It also implies that there are no translation restarts downstream of the coding region for the amino-terminal extension which produce active enzyme. Three internal deletions of various sizes, and which preserve the correct reading frame, were constructed in the coding region of the amino-terminal extension. Cells which harbor such in-frame deletions on a multi copy plasmid are viable, even when a deletion construct is the only source of GLN4-encoded activity. Extracts of cells which have one of these deletions have reduced, but measurable, glutamine tRNA synthetase activity. We conclude that the catalytic activity resides with the segment which is homologous to the E. coli enzyme and that the amino-terminal extension itself is dispensable for aminoacylation activity. Each of the internal in-frame deletion constructions is respiration-proficient. The amino-terminal extension, therefore, is not used for an essential mitochondrial function of the GLN4 gene product. Within the accuracy of the measurements, activities of four other aminoacyl-tRNA synthetases are not affected by the presence of a GLN4 internal deletion allele as the only source of GLN4-encoded activity. This suggests that the amino-terminal extension does not stabilize a complex which includes one or more of these four enzymes and whose activity depends on proper assembly of the complex.

摘要

酿酒酵母的GLN4编码一个由224个氨基酸组成的氨基末端延伸序列。它与一种多肽相连,该多肽与大肠杆菌谷氨酰胺tRNA合成酶共线性且有40%的同源性。我们研究了氨基末端延伸序列的潜在意义。在该片段中构建了两个单碱基和五个多碱基移码缺失突变。这些突变中的每一个都与致死表型相关。这表明氨基末端延伸序列的编码序列被翻译了。这也意味着在氨基末端延伸序列的编码区域下游不存在产生活性酶的翻译重新起始现象。在氨基末端延伸序列的编码区域构建了三个不同大小且保持正确阅读框的内部缺失突变。即使缺失构建体是GLN4编码活性的唯一来源,携带多拷贝质粒上此类框内缺失突变的细胞仍然是存活的。具有这些缺失突变之一的细胞提取物中谷氨酰胺tRNA合成酶活性降低,但仍可检测到。我们得出结论,催化活性存在于与大肠杆菌酶同源的片段中,并且氨基末端延伸序列本身对于氨酰化活性是可有可无的。每个内部框内缺失构建体的细胞呼吸功能正常。因此,氨基末端延伸序列不用于GLN4基因产物的必需线粒体功能。在测量精度范围内,当GLN4内部缺失等位基因作为GLN4编码活性的唯一来源时,其他四种氨酰-tRNA合成酶的活性不受影响。这表明氨基末端延伸序列不会稳定一个包含这四种酶中的一种或多种且其活性依赖于复合物正确组装的复合物。

相似文献

1
Construction and analysis of deletions in the amino-terminal extension of glutamine tRNA synthetase of Saccharomyces cerevisiae.酿酒酵母谷氨酰胺tRNA合成酶氨基末端延伸缺失的构建与分析
J Biol Chem. 1987 Aug 5;262(22):10807-13.
2
Gene for yeast glutamine tRNA synthetase encodes a large amino-terminal extension and provides a strong confirmation of the signature sequence for a group of the aminoacyl-tRNA synthetases.酵母谷氨酰胺tRNA合成酶基因编码一个大的氨基末端延伸,并为一组氨酰-tRNA合成酶的特征序列提供了有力的证实。
J Biol Chem. 1987 Aug 5;262(22):10801-6.
3
Deletion analysis in the amino-terminal extension of methionyl-tRNA synthetase from Saccharomyces cerevisiae shows that a small region is important for the activity and stability of the enzyme.
J Biol Chem. 1989 Oct 15;264(29):17126-30.
4
The polyanion-binding domain of cytoplasmic Lys-tRNA synthetase from Saccharomyces cerevisiae is not essential for cell viability.来自酿酒酵母的细胞质赖氨酸 - 转运RNA合成酶的聚阴离子结合结构域对于细胞活力并非必需。
Eur J Biochem. 1992 Jul 1;207(1):1-11. doi: 10.1111/j.1432-1033.1992.tb17012.x.
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Cloning of GLN4: an essential gene that encodes glutaminyl-tRNA synthetase in Saccharomyces cerevisiae.GLN4的克隆:酿酒酵母中一个编码谷氨酰胺-tRNA合成酶的必需基因。
J Bacteriol. 1985 Aug;163(2):763-8. doi: 10.1128/jb.163.2.763-768.1985.
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Identification of a glutaminyl-tRNA synthetase mutation Saccharomyces cerevisiae.酿酒酵母谷氨酰胺-tRNA合成酶突变的鉴定。
J Bacteriol. 1984 May;158(2):530-4. doi: 10.1128/jb.158.2.530-534.1984.
7
Homology of yeast mitochondrial leucyl-tRNA synthetase and isoleucyl- and methionyl-tRNA synthetases of Escherichia coli.酵母线粒体亮氨酰 - tRNA合成酶与大肠杆菌异亮氨酰 - tRNA合成酶和甲硫氨酰 - tRNA合成酶的同源性
J Biol Chem. 1988 Jan 15;263(2):850-6.
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Cloning and characterization of the gene coding for cytoplasmic seryl-tRNA synthetase from Saccharomyces cerevisiae.酿酒酵母细胞质丝氨酰 - tRNA合成酶编码基因的克隆与鉴定
Nucleic Acids Res. 1987 Mar 11;15(5):1887-904. doi: 10.1093/nar/15.5.1887.
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The yeast VAS1 gene encodes both mitochondrial and cytoplasmic valyl-tRNA synthetases.酵母VAS1基因编码线粒体和细胞质缬氨酰-tRNA合成酶。
J Biol Chem. 1988 Jan 5;263(1):52-7.
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An E. coli aminoacyl-tRNA synthetase can substitute for yeast mitochondrial enzyme function in vivo.一种大肠杆菌氨酰-tRNA合成酶可在体内替代酵母线粒体酶的功能。
Cell. 1987 Nov 20;51(4):643-9. doi: 10.1016/0092-8674(87)90133-4.

引用本文的文献

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Localization and RNA Binding of Mitochondrial Aminoacyl tRNA Synthetases.线粒体氨酰 tRNA 合成酶的定位和 RNA 结合。
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Human tRNA synthetase catalytic nulls with diverse functions.具有不同功能的人类 tRNA 合成酶催化缺陷型。
Science. 2014 Jul 18;345(6194):328-32. doi: 10.1126/science.1252943.
3
Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase.真核生物谷氨酰-tRNA 合成酶中古老 tRNA 传感器的结构保守性。
Nucleic Acids Res. 2012 Apr;40(8):3723-31. doi: 10.1093/nar/gkr1223. Epub 2011 Dec 17.
4
Promoting the formation of an active synthetase/tRNA complex by a nonspecific tRNA-binding domain.通过非特异性tRNA结合结构域促进活性合成酶/tRNA复合物的形成。
J Biol Chem. 2008 Nov 7;283(45):30699-706. doi: 10.1074/jbc.M805339200. Epub 2008 Aug 28.
5
Saccharomyces cerevisiae imports the cytosolic pathway for Gln-tRNA synthesis into the mitochondrion.酿酒酵母将谷氨酰胺-tRNA合成的胞质途径导入线粒体。
Genes Dev. 2005 Mar 1;19(5):583-92. doi: 10.1101/gad.1269305. Epub 2005 Feb 10.
6
Genetic code origins: tRNAs older than their synthetases?遗传密码的起源:转运RNA比其合成酶更古老?
Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11295-300. doi: 10.1073/pnas.95.19.11295.
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Rescuing an essential enzyme-RNA complex with a non-essential appended domain.用一个非必需附加结构域拯救一种必需的酶-RNA复合物。
EMBO J. 1997 May 15;16(10):2968-74. doi: 10.1093/emboj/16.10.2968.
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The core region of human glutaminyl-tRNA synthetase homologies with the Escherichia coli and yeast enzymes.人谷氨酰胺-tRNA合成酶的核心区域与大肠杆菌和酵母的酶具有同源性。
Nucleic Acids Res. 1988 Jun 24;16(12):5391-406. doi: 10.1093/nar/16.12.5391.
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A component of the multisynthetase complex is a multifunctional aminoacyl-tRNA synthetase.多合成酶复合体的一个组成部分是多功能氨酰-tRNA合成酶。
EMBO J. 1991 Dec;10(13):4267-77. doi: 10.1002/j.1460-2075.1991.tb05005.x.