产黄色素sp.菌株HAL-16的全基因组序列
Complete Genome Sequence of Yellow Pigment-Producing sp. Strain HAL-16.
作者信息
Kwon Soon Jae, Lee Pyung Cheon
机构信息
Department of Molecular Science and Technology, Ajou University, Suwon, South Korea.
Department of Applied Chemistry and Biological Engineering, Ajou University, Suwon, South Korea.
出版信息
Microbiol Resour Announc. 2020 Oct 8;9(41):e00985-20. doi: 10.1128/MRA.00985-20.
Abstract
sp. strain HAL-16, which was isolated from Antarctic soil samples, synthesizes a yellow pigment. The complete genome consists of a single circular chromosome (4,372,398 bp, with a G+C content of 62.7%) and a single circular plasmid (57,025 bp, with a G+C content of 59.4%). Five genes encoding carotenogenic enzymes were identified, suggesting that the yellow pigment is a hydroxy/keto-β-carotene.
摘要
从南极土壤样本中分离出的sp.菌株HAL-16能合成一种黄色色素。其完整基因组由一条单一的环状染色体（4,372,398 bp，G+C含量为62.7%）和一条单一的环状质粒（57,025 bp，G+C含量为59.4%）组成。鉴定出了五个编码类胡萝卜素生成酶的基因，这表明该黄色色素是一种羟基/酮基-β-胡萝卜素。
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本文引用的文献
1
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.
Nucleic Acids Res. 2018 Jul 2;46(W1):W246-W251. doi: 10.1093/nar/gky425.
2
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
3
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
Generation of structurally novel short carotenoids and study of their biological activity.
Sci Rep. 2016 Feb 23;6:21987. doi: 10.1038/srep21987.
5
Circlator: automated circularization of genome assemblies using long sequencing reads.
Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.
6
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
7
Proposed cytotoxic mechanisms of the saffron carotenoids crocin and crocetin on cancer cell lines.
Biochem Cell Biol. 2014 Apr;92(2):105-11. doi: 10.1139/bcb-2013-0091. Epub 2014 Jan 29.
8
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
9
Metabolic engineering towards biotechnological production of carotenoids in microorganisms.
Appl Microbiol Biotechnol. 2002 Oct;60(1-2):1-11. doi: 10.1007/s00253-002-1101-x. Epub 2002 Aug 24.
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