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嗜热真菌的比较基因组学揭示了火灾事件与发育基因之间的联系。

Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes.

机构信息

United States Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, 94720, California, USA.

Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, 94720, California, USA.

出版信息

Environ Microbiol. 2021 Jan;23(1):99-109. doi: 10.1111/1462-2920.15273. Epub 2020 Nov 3.

Abstract

Forest fires generate a large amount of carbon that remains resident on the site as dead and partially 'pyrolysed' (i.e. burnt) material that has long residency times and constitutes a significant pool in fire-prone ecosystems. In addition, fire-induced hydrophobic soil layers, caused by condensation of pyrolysed waxes and lipids, increase post-fire erosion and can lead to long-term productivity losses. A small set of pyrophilous fungi dominate post-fire soils and are likely to be involved with the degradation of all these compounds, yet almost nothing is currently known about what these fungi do or the metabolic processes they employ. In this study, we sequenced and analysed genomes from fungi isolated after Rim fire near Yosemite National Park in 2013 and showed the enrichment/expansion of CAZymes and families known to be involved in fruiting body initiation when compared to other basidiomycete fungi. We found gene families potentially involved in the degradation of the hydrophobic layer and pyrolysed organic matter, such as hydrophobic surface binding proteins, laccases (AA1_1), xylanases (GH10, GH11), fatty acid desaturases and tannases. Thus, pyrophilous fungi are important actors to restate the soil's functional capabilities.

摘要

森林火灾会产生大量的碳,这些碳以死亡和部分“热解”(即燃烧)物质的形式残留在原地,这些物质具有较长的居留时间,构成了火灾多发生态系统中的一个重要碳库。此外,热解蜡质和脂质冷凝引起的火诱生疏水性土壤层会增加火灾后的侵蚀,并可能导致长期生产力损失。一小部分嗜火真菌在火灾后土壤中占主导地位,很可能参与所有这些化合物的降解,但目前几乎没有人知道这些真菌的作用或它们所采用的代谢过程。在这项研究中,我们对 2013 年在约塞米蒂国家公园附近的里姆火灾后分离出的真菌进行了测序和分析,并显示与其他担子菌真菌相比,CAZymes 和已知参与子实体起始的家族得到了富集/扩展。我们发现了一些可能参与疏水性层和热解有机物降解的基因家族,如疏水性表面结合蛋白、漆酶(AA1_1)、木聚糖酶(GH10、GH11)、脂肪酸去饱和酶和单宁酶。因此,嗜火真菌是重新建立土壤功能能力的重要因素。

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