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DICOM 格式和协议标准化——数字病理学成功的核心要求。

DICOM Format and Protocol Standardization-A Core Requirement for Digital Pathology Success.

机构信息

PixelMed Publishing, LLC, Bangor, PA, USA.

出版信息

Toxicol Pathol. 2021 Jun;49(4):738-749. doi: 10.1177/0192623320965893. Epub 2020 Oct 16.

DOI:10.1177/0192623320965893
PMID:33063645
Abstract

As the use of digital techniques in toxicologic pathology expands, challenges of scalability and interoperability come to the fore. Proprietary formats and closed single-vendor platforms prevail but depend on the availability and maintenance of multiformat conversion libraries. Expedient for small deployments, this is not sustainable at an industrial scale. Primarily known as a standard for radiology, the Digital Imaging and Communications in Medicine (DICOM) standard has been evolving to support other specialties since its inception, to become the single ubiquitous standard throughout medical imaging. The adoption of DICOM for whole slide imaging (WSI) has been sluggish. Prospects for widespread commercially viable clinical use of digital pathology change the incentives. Connectathons using DICOM have demonstrated its feasibility for WSI and virtual microscopy. Adoption of DICOM for digital and computational pathology will allow the reuse of enterprise-wide infrastructure for storage, security, and business continuity. The DICOM embedded metadata allows detached files to remain useful. Bright-field and multichannel fluorescence, Z-stacks, cytology, and sparse and fully tiled encoding are supported. External terminologies and standard compression schemes are supported. Color consistency is defined using International Color Consortium profiles. The DICOM files can be dual personality Tagged Image File Format (TIFF) for legacy support. Annotations for computational pathology results can be encoded.

摘要

随着数字技术在毒理学病理学中的应用不断扩展,可扩展性和互操作性的挑战也日益凸显。专用格式和封闭的单一供应商平台占据主导地位,但它们依赖于多格式转换库的可用性和维护。虽然这种方法在小规模部署时很方便,但在工业规模上是不可持续的。Digital Imaging and Communications in Medicine(DICOM)标准最初是为放射学制定的标准,自成立以来一直在不断发展,以支持其他专业领域,现已成为医学成像领域的单一通用标准。虽然 DICOM 已经被用于全切片成像(WSI),但采用速度缓慢。数字病理学的广泛商业应用前景改变了激励因素。使用 DICOM 进行 Connectathons 已经证明了它在 WSI 和虚拟显微镜方面的可行性。采用 DICOM 进行数字和计算病理学将允许为存储、安全性和业务连续性重新使用企业范围的基础架构。DICOM 嵌入式元数据允许分离的文件仍然有用。它支持明场和多通道荧光、Z 堆叠、细胞学以及稀疏和完全平铺编码。它还支持外部术语和标准压缩方案。使用国际色彩联盟 (International Color Consortium) 配置文件定义颜色一致性。DICOM 文件可以是具有双重特性的 Tagged Image File Format(TIFF),以支持传统格式。可以对计算病理学结果进行编码注释。

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