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一种在标准医学影像存储库中支持数字病理学的高效架构。

An efficient architecture to support digital pathology in standard medical imaging repositories.

作者信息

Marques Godinho Tiago, Lebre Rui, Silva Luís Bastião, Costa Carlos

机构信息

University of Aveiro, Portugal.

BMD Software, Portugal.

出版信息

J Biomed Inform. 2017 Jul;71:190-197. doi: 10.1016/j.jbi.2017.06.009. Epub 2017 Jun 7.

DOI:10.1016/j.jbi.2017.06.009
PMID:28602907
Abstract

In the past decade, digital pathology and whole-slide imaging (WSI) have been gaining momentum with the proliferation of digital scanners from different manufacturers. The literature reports significant advantages associated with the adoption of digital images in pathology, namely, improvements in diagnostic accuracy and better support for telepathology. Moreover, it also offers new clinical and research applications. However, numerous barriers have been slowing the adoption of WSI, among which the most important are performance issues associated with storage and distribution of huge volumes of data, and lack of interoperability with other hospital information systems, most notably Picture Archive and Communications Systems (PACS) based on the DICOM standard. This article proposes an architecture of a Web Pathology PACS fully compliant with DICOM standard communications and data formats. The solution includes a PACS Archive responsible for storing whole-slide imaging data in DICOM WSI format and offers a communication interface based on the most recent DICOM Web services. The second component is a zero-footprint viewer that runs in any web-browser. It consumes data using the PACS archive standard web services. Moreover, it features a tiling engine especially suited to deal with the WSI image pyramids. These components were designed with special focus on efficiency and usability. The performance of our system was assessed through a comparative analysis of the state-of-the-art solutions. The results demonstrate that it is possible to have a very competitive solution based on standard workflows.

摘要

在过去十年中,随着不同制造商的数字扫描仪不断增多,数字病理学和全切片成像(WSI)发展势头迅猛。文献报道了病理学中采用数字图像的显著优势,即提高诊断准确性并更好地支持远程病理学。此外,它还提供了新的临床和研究应用。然而,众多障碍减缓了WSI的采用,其中最重要的是与海量数据存储和分发相关的性能问题,以及与其他医院信息系统缺乏互操作性,最显著的是基于DICOM标准的图像存档与通信系统(PACS)。本文提出了一种完全符合DICOM标准通信和数据格式的网络病理学PACS架构。该解决方案包括一个PACS存档,负责以DICOM WSI格式存储全切片成像数据,并提供基于最新DICOM网络服务的通信接口。第二个组件是一个零占用空间的查看器,可在任何网络浏览器中运行。它使用PACS存档标准网络服务消耗数据。此外,它具有一个特别适合处理WSI图像金字塔的切片引擎。这些组件在设计时特别注重效率和可用性。我们通过对现有最佳解决方案的比较分析来评估系统的性能。结果表明,基于标准工作流程可以拥有极具竞争力的解决方案。

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