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冰山一角的诊断困境:当前诊断方法的表现和未来互补的筛查方法。

The tip of the iceberg for diagnostic dilemmas: Performance of current diagnostics and future complementary screening approaches.

机构信息

Institut Pasteur, Unité Biologie et Génétique de la Paroi Bactérienne, Paris, France; Université de Paris, Sorbone Paris Cité, Paris, France.

NOVA Medical School, Universidade Nova de Lisboa, Lisbon, Portugal; Department of Neurology, Hospital de Egas Moniz, Centro Hospitalar de Lisboa Ocidental, Lisbon, Portugal.

出版信息

Eur J Med Genet. 2020 Dec;63(12):104089. doi: 10.1016/j.ejmg.2020.104089. Epub 2020 Oct 16.

Abstract

Genetic testing is currently the leading edge of clinical care when it comes to diagnostics. However, many questions remain unanswered even when employing next-generation sequencing techniques due to our inability to decode genetic variations and our limited repertoire of available diagnoses. Accordingly, diagnostic yields for current genomic screenings are <50% and fail to provide the whole picture, leaving the remaining patients without a definitive diagnosis. Human phenotypic/disease expression is explained by alterations not only at the genome, but also at the transcriptome, proteome and metabolome levels. These "higher" complexity levels represent at wealth of information, and diagnostic screenings tests at these levels have been shown to significantly improve diagnostic yields in specific populations compared to conventional diagnostic workup or gold standards in use (7-30% increase in diagnostic yields, depending on the population, approach and gold standard being compared against). However, these are not yet routinely available to clinicians. Due to their dynamic and modifiable nature, tapping into data from different omics will improve our understanding of the pathophysiological bases underlying (many yet to characterize) human disorders. We herein review how alterations at these levels (e.g. post-transcriptional and post-translational) may be pathogenic, how such tests may be implemented and in which situations they are of significant utility.

摘要

当涉及到诊断时,基因检测是目前临床护理的前沿。然而,即使采用下一代测序技术,由于我们无法解码基因变异和可用诊断的有限范围,许多问题仍然没有答案。因此,当前基因组筛查的诊断率<50%,无法提供全貌,使其余患者没有明确的诊断。人类表型/疾病的表达不仅由基因组,而且由转录组、蛋白质组和代谢组水平的改变来解释。这些“更高”的复杂水平代表着丰富的信息,与传统的诊断方法或正在使用的金标准相比,这些水平的诊断筛查已被证明可显著提高特定人群的诊断率(根据人群、方法和正在比较的金标准,诊断率提高 7-30%)。然而,这些方法尚未在临床医生中常规应用。由于它们的动态和可修改性质,利用来自不同组学的数据将提高我们对(许多尚未表征)人类疾病病理生理基础的理解。本文综述了这些水平的改变(例如转录后和翻译后)如何具有致病性,以及如何实施这些测试,以及在哪些情况下它们具有重要的应用价值。

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