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马来西亚白腰雨燕(Thunberg,1812年)的分子性别鉴定

Molecular sex identification of Malaysian White-Nest Swiftlet ( Thunberg, 1812).

作者信息

Osman Muhammad Amin, Sugnaseelan Sumita, Panandam Jothi Malar, Ab Ghani Nurul Izza

机构信息

Department of Animal Science Faculty of Agriculture Universiti Putra Malaysia Serdang Selangor Malaysia.

Ecotone Worldwide Sdn. Bhd Kelana Centre Point Petaling Jaya Selangor Malaysia.

出版信息

Ecol Evol. 2020 Aug 25;10(19):10440-10448. doi: 10.1002/ece3.6699. eCollection 2020 Oct.

Abstract

The difficulty in differentiating the sex of monomorphic bird species has made molecular sexing an important tool in addressing this problem. This method uses noninvasively collected materials such as feathers and may be advantageous for sexing endangered as well as commercialized bird species. In this study, seven primer sets for sexing birds were screened in using a total of 13 feather samples that were randomly selected from the state of Perak, Malaysia. From the screening analysis, only one primer set (P8/WZ/W) successfully differentiated the sex of . PCR amplification produced a single 255-bp DNA fragment for males which was derived from (CHD gene region in the sex chromosome Z), while for the females it produced two fragments (144 and 255 bp). The 144-bp fragment was from (CHD gene region in the sex chromosome W). Results from sequencing showed no variations in the base sequences of the and amplified fragments within the same sexes, except for one male sample (A23) where at position 166, a base substitution occurred (G → A). Phylogenetic analysis of showed that four (Apodiformes; Gruiformes; Passeriformes; and Pelecaniformes) out of the five orders investigated had formed four clear clusters within their orders, including the studied order: Apodiformes. Whereas in , four (Accipitriformes; Columbiformes; Galliformes; and Passeriformes) out of five orders investigated formed four clear clusters within their orders, excluding the studied order. In addition, and (both Apodiformes) showed less divergence in than (0% . 9%). The result suggests that in , CHD gene evolution occurred at a higher rate in males () compared to females (). This finding may be useful for further studies on sex ratio and breeding management of .

摘要

难以区分单态鸟类物种的性别使得分子性别鉴定成为解决这一问题的重要工具。该方法使用羽毛等非侵入性采集的材料,对于濒危鸟类以及商业化鸟类物种的性别鉴定可能具有优势。在本研究中,使用从马来西亚霹雳州随机选取的总共13个羽毛样本,对7组用于鸟类性别鉴定的引物进行了筛选。从筛选分析中,只有一组引物(P8/WZ/W)成功区分了[鸟类名称]的性别。PCR扩增为雄性产生了一个单一的255 bp DNA片段,该片段源自[基因名称](性染色体Z上的CHD基因区域),而对于雌性则产生了两个片段(144和255 bp)。144 bp的片段来自[基因名称](性染色体W上的CHD基因区域)。测序结果表明,同一性别内[基因名称1]和[基因名称2]扩增片段的碱基序列没有变化,除了一个雄性样本(A23)在第166位发生了碱基替换(G→A)。[基因名称]的系统发育分析表明,在所研究的五个目(雨燕目、鹤形目、雀形目和鹈形目)中,有四个目在其目内形成了四个清晰的聚类,包括所研究的雨燕目。而在[另一种鸟类名称]中,在所研究的五个目(鹰形目、鸽形目、鸡形目和雀形目)中,有四个目在其目内形成了四个清晰的聚类,但不包括所研究的目。此外,[两种雨燕目鸟类名称](均为雨燕目)在[基因名称]上的分歧小于[另一种鸟类名称](0%对9%)。结果表明,在[鸟类名称]中,与雌性([基因名称2])相比,雄性([基因名称1])的CHD基因进化速率更高。这一发现可能有助于进一步研究[鸟类名称]的性别比例和繁殖管理。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14f0/7548184/62f811f11aa7/ECE3-10-10440-g001.jpg

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