Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic.
Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, UK.
Nat Plants. 2020 Nov;6(11):1325-1329. doi: 10.1038/s41477-020-00785-x. Epub 2020 Oct 19.
Given the 2,400-fold range of genome sizes (0.06-148.9 Gbp (gigabase pair)) of seed plants (angiosperms and gymnosperms) with a broadly similar gene content (amounting to approximately 0.03 Gbp), the repeat-sequence content of the genome might be expected to increase with genome size, resulting in the largest genomes consisting almost entirely of repetitive sequences. Here we test this prediction, using the same bioinformatic approach for 101 species to ensure consistency in what constitutes a repeat. We reveal a fundamental change in repeat turnover in genomes above around 10 Gbp, such that species with the largest genomes are only about 55% repetitive. Given that genome size influences many plant traits, habits and life strategies, this fundamental shift in repeat dynamics is likely to affect the evolutionary trajectory of species lineages.
鉴于种子植物(被子植物和裸子植物)的基因组大小范围为 2400 倍(0.06-148.9 Gbp(千兆碱基对)),而基因含量大致相似(约为 0.03 Gbp),因此可以预期基因组中的重复序列含量会随基因组大小的增加而增加,从而导致最大的基因组几乎完全由重复序列组成。在这里,我们使用相同的生物信息学方法来测试这一预测,对 101 个物种进行了测试,以确保重复序列的构成具有一致性。我们揭示了在大约 10 Gbp 以上的基因组中重复周转率的根本变化,以至于最大基因组的物种只有大约 55%是重复的。鉴于基因组大小会影响许多植物的特征、习性和生活策略,这种重复动态的根本转变可能会影响物种谱系的进化轨迹。