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金尼芯片:一种新型分子快速诊断设备评估,用于检测沙眼流行地区的沙眼衣原体。

DjinniChip: evaluation of a novel molecular rapid diagnostic device for the detection of Chlamydia trachomatis in trachoma-endemic areas.

机构信息

Clinical Research Department, London School of Hygiene and Tropical Medicine, London, UK.

Eye Health Project, Kilimanjaro Christian Medical Centre, Moshi, Tanzania.

出版信息

Parasit Vectors. 2020 Oct 27;13(1):533. doi: 10.1186/s13071-020-04414-6.

Abstract

BACKGROUND

The clinical signs of active trachoma are often present in the absence of ocular Chlamydia trachomatis infection, particularly following mass drug administration. Treatment decisions following impact surveys and in post-control surveillance for communities are currently based on the prevalence of clinical signs, which may result in further unnecessary distribution of mass antibiotic treatment and the increased spread of macrolide resistance alleles in 'off-target' bacterial species. We therefore developed a simple, fast, low cost diagnostic assay (DjinniChip) for diagnosis of ocular C. trachomatis for use by trachoma control programmes.

METHODS

The study was conducted in the UK, Germany and Tanzania. For clinical testing in Tanzania, specimens from a sample of 350 children between the ages of 7 to 15 years, which were part of a longitudinal cohort that began in February 2012 were selected. Two ocular swabs were taken from the right eye. The second swab was collected dry, kept cool in the field and archived at - 80 °C before sample lysis for DjinniChip detection and parallel nucleic acid purification and detection/quantification by qPCR assay.

RESULTS

DjinniChip was able to reliably detect > 10 copies of C. trachomatis per test and correctly identified 7/10 Quality Control for Molecular Diagnostics C. trachomatis panel samples, failing to detect 3 positive samples with genome equivalent amounts ≤ 10 copies. DjinniChip performed well across a range of typical trachoma field conditions and when used by lay personnel using a series of mock samples. In the laboratory in Tanzania, using clinical samples the sensitivity and specificity of DjinniChip for C. trachomatis was 66% (95% CI 51-78) and 94.8 (95% CI 91-97%) with an overall accuracy of 90.1 (95% CI 86.4-93).

CONCLUSIONS

DjinniChip performance is extremely promising, particularly its ability to detect low concentrations of C. trachomatis and its usability in field conditions. The DjinniChip requires further development to reduce inhibition and advance toward a closed system. DjinniChip results did not vary between local laboratory results and typical trachoma field settings, illustrating its potential for use in low-resource areas to prevent unnecessary rounds of MDA and to monitor for C. trachomatis recrudescence.

摘要

背景

活动性沙眼的临床症状在没有眼部沙眼衣原体感染的情况下经常出现,尤其是在大规模药物治疗之后。在影响调查后和社区的后续控制监测中,治疗决策目前基于临床症状的流行率,这可能导致进一步不必要地分发大量抗生素治疗,并增加“非目标”细菌物种中大环内酯类耐药等位基因的传播。因此,我们开发了一种简单、快速、低成本的诊断检测方法(DjinniChip),用于诊断沙眼衣原体眼部感染,供沙眼控制项目使用。

方法

该研究在英国、德国和坦桑尼亚进行。在坦桑尼亚进行临床检测时,从 2012 年 2 月开始的一个纵向队列中选择了 350 名 7 至 15 岁儿童的样本中的 350 个样本进行检测。从右眼采集了两个眼部拭子。第二个拭子在现场干燥保存,在 -80°C 下冷藏,然后进行样品裂解,用于 DjinniChip 检测,同时平行进行核酸纯化和检测/定量 qPCR 检测。

结果

DjinniChip 能够可靠地检测到 >10 个拷贝的沙眼衣原体/测试,并正确识别了 10 个质量控制分子诊断沙眼衣原体检测试剂盒中的 7 个样本,未能检测到 3 个基因组当量等于或小于 10 个拷贝的阳性样本。DjinniChip 在一系列典型的沙眼现场条件下表现良好,并且当由非专业人员使用一系列模拟样本时也表现良好。在坦桑尼亚的实验室中,使用临床样本,DjinniChip 对沙眼衣原体的敏感性和特异性分别为 66%(95%CI 51-78)和 94.8%(95%CI 91-97%),总准确性为 90.1%(95%CI 86.4-93)。

结论

DjinniChip 的性能非常有前景,特别是它能够检测低浓度的沙眼衣原体,以及在现场条件下的可用性。DjinniChip 需要进一步开发,以减少抑制并朝着封闭系统前进。DjinniChip 的结果与当地实验室的结果和典型的沙眼现场设置没有差异,表明它有可能在资源匮乏地区用于防止不必要的 MDA 循环,并监测沙眼衣原体的复发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b3c/7590679/30bea9b571d8/13071_2020_4414_Fig1_HTML.jpg

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