Department of Obstetrics and Gynecology, Korea University College of Medicine, Seoul, Republic of Korea.
Division of Medical Genetics, University of California, San Diego, CA, U.S.A.
Anticancer Res. 2020 Nov;40(11):6017-6028. doi: 10.21873/anticanres.14623.
BACKGROUND/AIM: R-spondins control WNT signaling and RSPO1 and LGR6, two of its receptors, are uniquely expressed at high levels in high-grade serous ovarian cancer (HGSOC). The aim of this study was to assess the interrelations between the expression of the RSPOs and LGRs in HGSOC and in the ovarian surface (OSE) and fallopian tube surface epithelium (FTSE) from which HGSOC arises.
Analysis of TCGA (HGSOC), CCLE (ovary), and other publicly accessed RNA-Seq data using UC San Diego Computational Cancer Analysis Library (CCAL) to perform differential expression analysis, association studies, and gene set inspection using the single-sample GSEA method. Additionally, we employed multiple publicly available databases including StringDB, Human Protein Atlas, and cBioPortal to aid the investigation.
Among normal tissues, expression of RSPO1, LGR5 and LGR6 was highest in the fallopian tube. The relative levels of expression of the RSPOs and LGRs in the OSE and FTSE matched those in HGSOC. RSPO1 and LGR6 were highly co-expressed in all three tissues. Gene set enrichment analysis (GSEA) showed that expression of RSPO1 was strongly linked to the enrichment of three separate WNT-driven GO pathways. Analysis of genes that impacted overall survival identified two other immediately adjacent genes that control WNT signaling, KREMEN1 and ZNRF3 whose expression and copy number were coordinately linked.
RSPO1 and LGR6 are coordinately expressed in HGSOC and the two normal tissues from which this tumor arises, and their expression is linked to WNT signaling pathways known the control cell fate and proliferation.
背景/目的:RSPondins 控制 WNT 信号,RSPO1 和 LGR6 是其两个受体,在高级别浆液性卵巢癌 (HGSOC) 中高水平特异性表达。本研究旨在评估 HGSOC 中 RSPO 和 LGR 的表达与卵巢表面 (OSE) 和输卵管表面上皮 (FTSE) 之间的相互关系,HGSOC 即由此产生。
使用加利福尼亚大学圣地亚哥分校计算癌症分析库 (CCAL) 分析 TCGA (HGSOC)、CCLE (卵巢) 和其他公开获取的 RNA-Seq 数据,进行差异表达分析、关联研究和使用单样本 GSEA 方法的基因集检验。此外,我们还利用多个公开可用的数据库,包括 StringDB、人类蛋白质图谱和 cBioPortal,以协助调查。
在正常组织中,RSPO1、LGR5 和 LGR6 在输卵管中的表达最高。OSE 和 FTSE 中 RSPO 和 LGR 的表达相对水平与 HGSOC 相匹配。RSPO1 和 LGR6 在这三种组织中高度共表达。基因集富集分析 (GSEA) 显示,RSPO1 的表达与三个独立的 WNT 驱动的 GO 途径的富集密切相关。对影响总生存的基因进行分析,确定了另外两个控制 WNT 信号的紧邻基因,其表达和拷贝数协同相关。
RSPO1 和 LGR6 在 HGSOC 及其两种正常组织中协调表达,其表达与已知控制细胞命运和增殖的 WNT 信号通路相关。