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序列分析和特征描述完整的沙捞越细鲫(鲤形目:鲤科:细鲫属)线粒体基因组 DNA,并进行系统发育分析。

Sequencing and characterisation of complete mitogenome DNA for Rasbora sarawakensis (Cypriniformes: Cyprinidae: Rasbora) with phylogenetic consideration.

机构信息

Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Sarawak, Malaysia.

Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Sarawak, Malaysia.

出版信息

Comput Biol Chem. 2020 Dec;89:107403. doi: 10.1016/j.compbiolchem.2020.107403. Epub 2020 Oct 13.

Abstract

The Blueline Rasbora (Rasbora sarawakensis) is a small ray-finned fish categorized under the genus Rasbora in the Cyprinidae family. In this study, the complete mitogenome sequence of R. sarawakensis was sequenced using four primers targeting overlapping regions. The mitogenome is 16,709 bp in size, accommodating 22 transfer RNA genes, 13 protein-coding genes, two ribosomal RNA genes and a putative control region. Identical gene organisation was detected between this species and other genus counterparts. The heavy strand houses 28 genes while the light strand stores the other nine genes. Most protein-coding genes employ ATG as start codon, excluding COI gene, which utilizes GTG instead. The central conserved sequence blocks (CSB-F, CSB-E and CSB-D), variable sequence blocks (CSB-3, CSB-2 and CSB-1) as well as the terminal associated sequence (TAS) are conserved in the control region. The maximum likelihood phylogenetic tree revealed the divergence of R. sarawakensis from the basal region of the Rasbora clade, where its evolutionary relationships with R. maculatus and R. pauciperforata are poorly resolved as indicated by the low bootstrap values. This work acts as steppingstone towards further molecular evolution and population genetics studies of Rasbora genus in future.

摘要

蓝线鱲(Rasbora sarawakensis)是一种小型的射线鳍鱼类,属于鲤科鱲属。在这项研究中,使用针对重叠区域的四个引物对 R. sarawakensis 的完整线粒体基因组序列进行了测序。线粒体基因组大小为 16709bp,包含 22 个转移 RNA 基因、13 个蛋白质编码基因、两个核糖体 RNA 基因和一个假定的控制区。在该物种和其他属的对应物之间检测到相同的基因组织。重链包含 28 个基因,而轻链则存储其他 9 个基因。大多数蛋白质编码基因采用 ATG 作为起始密码子,除了 COI 基因,它使用 GTG 替代。控制区保守的中央序列块(CSB-F、CSB-E 和 CSB-D)、可变序列块(CSB-3、CSB-2 和 CSB-1)以及末端相关序列(TAS)。最大似然系统发育树显示,R. sarawakensis 与 Rasbora 进化枝的基部区域分化,其与 R. maculatus 和 R. pauciperforata 的进化关系由于低的自举值而没有得到很好的解决。这项工作为未来进一步研究 Rasbora 属的分子进化和群体遗传学奠定了基础。

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