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从墨西哥豆象(; 博赫曼,1833年)幼虫的从头转录组中鉴定出的杀虫PF2凝集素潜在靶标的基因序列。

Gene Sequences of Potential Targets of Insecticidal PF2 Lectin Identified from the Larval De Novo Transcriptome of the Mexican Bean Weevil (; Boheman 1833).

作者信息

Lagarda-Diaz Irlanda, Hernández-Oñate Miguel Ángel, Huerta-Ocampo José Ángel, Guzmán-Partida Ana M, Winzerling Joy, Geiser Dawn, Vázquez-Moreno Luz

机构信息

CONACYT-Universidad de Sonora, Hermosillo, Sonora 83000, Mexico.

CONACYT-Centro de Investigación en Alimentación y Desarrollo, A.C., Hermosillo, Sonora 83304, Mexico.

出版信息

Insects. 2020 Oct 27;11(11):736. doi: 10.3390/insects11110736.

Abstract

The available genomic and proteomic information of non-model organisms is often underrepresented in public databases hindering their study at molecular, cellular, and physiological levels. Information on (Mexican bean weevil) is poorly represented in databases, yet it is a major pest of common beans. We report the transcriptome of larvae; transcripts were sequenced using an Illumina RNA-Seq technology and assembled de novo identifying 29,029 unigenes with an average size of 1168 bp and an N50 value of 2196 bp. About 15,124 unigenes (52%) were functionally annotated and categorized. Further analysis revealed 30 unigene sequences encoding putative targets of the insecticidal PF2 lectin. The complete deduced amino acid sequences of eight selected proteins potentially related to insecticidal mechanism of Palo Fierro 2 (PF2) were used for predicting probable N-glycosylation sites and analyzing phylogenetic relationships with insect sequences. This work provides a dramatic increase in the genetic resources available for Coleopterans and set the basis for developing future studies on biological aspects and potential control strategies for .

摘要

非模式生物的现有基因组和蛋白质组信息在公共数据库中往往代表性不足,这阻碍了在分子、细胞和生理水平上对它们的研究。关于墨西哥豆象的信息在数据库中的呈现较少,但它是菜豆的主要害虫。我们报告了墨西哥豆象幼虫的转录组;使用Illumina RNA-Seq技术对转录本进行测序,并从头组装,鉴定出29,029个单基因,平均大小为1168 bp,N50值为2196 bp。约15,124个单基因(52%)进行了功能注释和分类。进一步分析揭示了30个编码杀虫PF2凝集素假定靶标的单基因序列。从八个选定的可能与帕洛费罗2(PF2)杀虫机制相关的蛋白质中推导得到的完整氨基酸序列,用于预测可能的N-糖基化位点,并分析与昆虫序列的系统发育关系。这项工作极大地增加了鞘翅目可用的遗传资源,并为开展未来关于墨西哥豆象生物学方面和潜在控制策略的研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d86f/7693830/b396d258dba5/insects-11-00736-g001.jpg

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