Hao Shijie, Han Kai, Meng Lingfeng, Huang Xiaoyun, Cao Wei, Shi Chengcheng, Zhang Mengqi, Wang Yilin, Liu Qun, Zhang Yaolei, Sun Haixi, Seim Inge, Xu Xun, Liu Xin, Fan Guangyi
BGI Education Center, University of Chinese Academic of Sciences, Shenzhen 518083, China.
BGI-Qingqao, BGI-Shenzhen, Qingdao, 266555, China.
iScience. 2020 Oct 9;23(11):101662. doi: 10.1016/j.isci.2020.101662. eCollection 2020 Nov 20.
is a basal clade of teleost, evolving since the Jurassic period. The genomes of species would shed light on the evolution and adaptation of teleost. Here, we established a chromosome-level genome of African arowana. Together with the genomes of pirarucu and Asian arowana, we found that they diverged at ∼106.1 million years ago (MYA) and ∼59.2 MYA, respectively, which are coincident with continental separation. Interestingly, we identified a dynamic genome evolution characterized by a fast evolutionary rate and a high pseudogenization rate in African arowana and pirarucu. Additionally, more transposable elements were found in Asian arowana which confer more gene duplications. Moreover, we found the contraction of olfactory receptor and the expansion of UGT in African arowana might be related to its transformation from carnivore to be omnivore. Taken together, we provided valuable genomic resource of and revealed the correlation of biogeography and teleost evolution.
是硬骨鱼的一个基部类群,自侏罗纪时期就开始演化。该物种的基因组将为硬骨鱼的进化和适应性提供线索。在这里,我们构建了非洲龙鱼的染色体水平基因组。结合巨骨舌鱼和亚洲龙鱼的基因组,我们发现它们分别在约1.061亿年前(百万年前)和约5920万年前分化,这与大陆分离时间一致。有趣的是,我们鉴定出非洲龙鱼和巨骨舌鱼具有以快速进化速率和高假基因化率为特征的动态基因组进化。此外,在亚洲龙鱼中发现了更多的转座元件,这导致了更多的基因复制。而且,我们发现非洲龙鱼嗅觉受体的收缩和尿苷二磷酸葡萄糖醛酸基转移酶(UGT)的扩张可能与其从肉食性向杂食性的转变有关。综上所述,我们提供了有价值且揭示了生物地理学与硬骨鱼进化之间的相关性。 (原文最后一处“of ”后内容缺失,翻译有部分不完整感)