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“Acinetobacter mesopotamicus”GC2 菌株不代表一个新物种,而是属于洛菲不动杆菌,这是通过全基因组序列分析揭示的。

Strain "Acinetobacter mesopotamicus" GC2 Does Not Represent a Novel Species, but Belongs to the Species Acinetobacter lwoffii as Revealed by Whole-Genome Sequence-Based Analysis.

机构信息

Laboratory of Bacterial Genetics, Centre for Epidemiology and Microbiology, National Institute of Public Health, Šrobárova 48, 100 42, Prague 10, Czech Republic.

Department of Medical Microbiology, Second Faculty of Medicine, Charles University, V Úvalu 84, 150 06, Prague 5, Czech Republic.

出版信息

Curr Microbiol. 2021 Jan;78(1):369-370. doi: 10.1007/s00284-020-02275-x. Epub 2020 Nov 2.

Abstract

The formal scientific name "Acinetobacter mesopotamicus" has recently been proposed for bacterial strain GC2 isolated from soil (Curr Microbiol 77:3192-3200). However, the recalculation of the average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) parameters revealed that their values for the genome sequences of GC2 and Acinetobacter lwoffii NCTC 5866 were as high as 95.7% and 66.1%, respectively. Moreover, the ANI and dDDH values for the genome of GC2 tested against those of 10 reference strains of A. lwoffii were 95.5-96.7% and 65.5-74.2%, respectively, and fall within the intraspecies range of these values known for A. lwoffii. These data indicate that strain GC2 belongs to A. lwoffii and contradicts the results of the authors of the proposal, who found the ANI and dDDH values for the GC2 and A. lwoffii DSM 2403 genomes to be 88.87% and 36.1%, respectively. The misclassification of strain GC2 is likely to result from the use of an incorrect reference genome sequence for in silico comparative analyses.

摘要

最近,从土壤中分离出的细菌菌株 GC2 被提议使用正式的科学名称“Acinetobacter mesopotamicus”。然而,重新计算平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交(dDDH)参数表明,GC2 和 Acinetobacter lwoffii NCTC 5866 的基因组序列的这些值分别高达 95.7%和 66.1%。此外,GC2 基因组与 10 株 A. lwoffii 参考菌株的 ANI 和 dDDH 值分别为 95.5-96.7%和 65.5-74.2%,均落在 A. lwoffii 已知的种内范围之内。这些数据表明,菌株 GC2 属于 A. lwoffii,与该提议的作者的结果相矛盾,他们发现 GC2 和 A. lwoffii DSM 2403 基因组的 ANI 和 dDDH 值分别为 88.87%和 36.1%。GC2 菌株的错误分类可能是由于在计算机比较分析中使用了不正确的参考基因组序列。

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