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[深度学习在癌症预后预测模型中的应用]

[Application of deep learning in cancer prognosis prediction model].

作者信息

Chen Wen, Wang Xu, Duan Huihong, Zhang Xiaobing, Dong Ting, Nie Shengdong

机构信息

Institute of Medical Imaging, University of Shanghai for Science and Technology, Shanghai 200093, P.R.China.

出版信息

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2020 Oct 25;37(5):918-929. doi: 10.7507/1001-5515.201909066.

DOI:10.7507/1001-5515.201909066
PMID:33140618
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10320539/
Abstract

In recent years, deep learning has provided a new method for cancer prognosis analysis. The literatures related to the application of deep learning in the prognosis of cancer are summarized and their advantages and disadvantages are analyzed, which can be provided for in-depth research. Based on this, this paper systematically reviewed the latest research progress of deep learning in the construction of cancer prognosis model, and made an analysis on the strengths and weaknesses of relevant methods. Firstly, the construction idea and performance evaluation index of deep learning cancer prognosis model were clarified. Secondly, the basic network structure was introduced, and the data type, data amount, and specific network structures and their merits and demerits were discussed. Then, the mainstream method of establishing deep learning cancer prognosis model was verified and the experimental results were analyzed. Finally, the challenges and future research directions in this field were summarized and expected. Compared with the previous models, the deep learning cancer prognosis model can better improve the prognosis prediction ability of cancer patients. In the future, we should continue to explore the research of deep learning in cancer recurrence rate, cancer treatment program and drug efficacy evaluation, and fully explore the application value and potential of deep learning in cancer prognosis model, so as to establish an efficient and accurate cancer prognosis model and realize the goal of precision medicine.

摘要

近年来,深度学习为癌症预后分析提供了一种新方法。对深度学习在癌症预后应用方面的相关文献进行了总结,并分析了其优缺点,可为深入研究提供参考。在此基础上,本文系统综述了深度学习在癌症预后模型构建方面的最新研究进展,并对相关方法的优缺点进行了分析。首先,阐明了深度学习癌症预后模型的构建思路和性能评价指标。其次,介绍了基本网络结构,并讨论了数据类型、数据量以及具体的网络结构及其优缺点。然后,对建立深度学习癌症预后模型的主流方法进行了验证并分析了实验结果。最后,总结并展望了该领域面临的挑战和未来研究方向。与以往模型相比,深度学习癌症预后模型能够更好地提高癌症患者的预后预测能力。未来,应继续探索深度学习在癌症复发率、癌症治疗方案及药物疗效评估等方面的研究,充分挖掘深度学习在癌症预后模型中的应用价值和潜力,从而建立高效、准确的癌症预后模型,实现精准医疗的目标。

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[Application of deep learning in cancer prognosis prediction model].[深度学习在癌症预后预测模型中的应用]
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本文引用的文献

1
Overall survival prediction of non-small cell lung cancer by integrating microarray and clinical data with deep learning.利用深度学习整合微阵列和临床数据对非小细胞肺癌进行总体生存预测。
Sci Rep. 2020 Mar 13;10(1):4679. doi: 10.1038/s41598-020-61588-w.
2
DeepBTS: Prediction of Recurrence-free Survival of Non-small Cell Lung Cancer Using a Time-binned Deep Neural Network.DeepBTS:使用时间分箱深度神经网络预测非小细胞肺癌无复发生存率。
Sci Rep. 2020 Feb 6;10(1):1952. doi: 10.1038/s41598-020-58722-z.
3
Deep Learning of Imaging Phenotype and Genotype for Predicting Overall Survival Time of Glioblastoma Patients.基于影像组学特征和基因型的深度学习预测胶质母细胞瘤患者总生存期
IEEE Trans Med Imaging. 2020 Jun;39(6):2100-2109. doi: 10.1109/TMI.2020.2964310. Epub 2020 Jan 6.
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Assessing Radiology Research on Artificial Intelligence: A Brief Guide for Authors, Reviewers, and Readers-From the Editorial Board.评估人工智能放射学研究:给作者、审稿人和读者的简要指南——来自编辑委员会
Radiology. 2020 Mar;294(3):487-489. doi: 10.1148/radiol.2019192515. Epub 2019 Dec 31.
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Deep Transfer Learning and Radiomics Feature Prediction of Survival of Patients with High-Grade Gliomas.深度学习和放射组学特征预测高级别脑胶质瘤患者的生存。
AJNR Am J Neuroradiol. 2020 Jan;41(1):40-48. doi: 10.3174/ajnr.A6365. Epub 2019 Dec 19.
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Development and validation of a deep learning algorithm for improving Gleason scoring of prostate cancer.一种用于改善前列腺癌Gleason评分的深度学习算法的开发与验证
NPJ Digit Med. 2019 Jun 7;2:48. doi: 10.1038/s41746-019-0112-2. eCollection 2019.
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Radiomics and Machine Learning for Radiotherapy in Head and Neck Cancers.头颈癌放射治疗中的放射组学与机器学习
Front Oncol. 2019 Mar 27;9:174. doi: 10.3389/fonc.2019.00174. eCollection 2019.
8
Group Lasso Regularized Deep Learning for Cancer Prognosis from Multi-Omics and Clinical Features.基于多组学和临床特征的癌症预后的群组套索正则化深度学习
Genes (Basel). 2019 Mar 21;10(3):240. doi: 10.3390/genes10030240.
9
Artificial intelligence for precision oncology: beyond patient stratification.用于精准肿瘤学的人工智能:超越患者分层
NPJ Precis Oncol. 2019 Feb 25;3:6. doi: 10.1038/s41698-019-0078-1. eCollection 2019.
10
Deep learning in head & neck cancer outcome prediction.深度学习在头颈部癌症预后预测中的应用。
Sci Rep. 2019 Feb 26;9(1):2764. doi: 10.1038/s41598-019-39206-1.