• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

单细胞 RNA 测序揭示 Foxa2 小鼠胚胎肝脏发育轨迹。

Embryonic liver developmental trajectory revealed by single-cell RNA sequencing in the Foxa2 mouse.

机构信息

Department of Biochemistry, YLL School of Medicine, National University of Singapore, Singapore, 119615, Singapore.

Laboratory of Human Diseases and Immunotherapies, West China Hospital, Sichuan University, 610041, Chengdu, China.

出版信息

Commun Biol. 2020 Nov 3;3(1):642. doi: 10.1038/s42003-020-01364-8.

DOI:10.1038/s42003-020-01364-8
PMID:33144666
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7642341/
Abstract

The liver and gallbladder are among the most important internal organs derived from the endoderm, yet the development of the liver and gallbladder in the early embryonic stages is not fully understood. Using a transgenic Foxa2 reporter mouse line, we performed single-cell full-length mRNA sequencing on endodermal and hepatic cells isolated from ten embryonic stages, ranging from E7.5 to E15.5. We identified the embryonic liver developmental trajectory from gut endoderm to hepatoblasts and characterized the transcriptome of the hepatic lineage. More importantly, we identified liver primordium as the nascent hepatic progenitors with both gut and liver features and documented dynamic gene expression during the epithelial-hepatic transition (EHT) at the stage of liver specification during E9.5-11.5. We found six groups of genes switched on or off in the EHT process, including diverse transcripitional regulators that had not been previously known to be expressed during EHT. Moreover, we identified and revealed transcriptional profiling of gallbladder primordium at E9.5. The present data provides a high-resolution resource and critical insights for understanding the liver and gallbladder development.

摘要

肝脏和胆囊是源自内胚层的最重要的内部器官之一,但早期胚胎阶段肝脏和胆囊的发育还不完全清楚。我们使用一种转基因 Foxa2 报告鼠系,对源自从 E7.5 到 E15.5 的十个胚胎阶段的内胚层和肝细胞进行了单细胞全长 mRNA 测序。我们确定了从肠内胚层到肝前体细胞的胚胎肝脏发育轨迹,并对肝谱系的转录组进行了特征描述。更重要的是,我们发现肝原基是具有肠和肝特征的新生肝祖细胞,并在 E9.5-11.5 的肝脏特化阶段的上皮-肝转化(EHT)过程中记录了动态基因表达。我们发现 EHT 过程中有六组基因被开启或关闭,其中包括先前未知在 EHT 期间表达的多种转录调节因子。此外,我们还鉴定并揭示了 E9.5 时胆囊原基的转录谱。本数据提供了一个高分辨率的资源,并为理解肝脏和胆囊的发育提供了关键的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/4bf20153bd1e/42003_2020_1364_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/dc711d1d73f8/42003_2020_1364_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/00cbe12dcbb8/42003_2020_1364_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/ea5be5532887/42003_2020_1364_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/774867407942/42003_2020_1364_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/4bf20153bd1e/42003_2020_1364_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/dc711d1d73f8/42003_2020_1364_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/00cbe12dcbb8/42003_2020_1364_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/ea5be5532887/42003_2020_1364_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/774867407942/42003_2020_1364_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c28e/7642341/4bf20153bd1e/42003_2020_1364_Fig5_HTML.jpg

相似文献

1
Embryonic liver developmental trajectory revealed by single-cell RNA sequencing in the Foxa2 mouse.单细胞 RNA 测序揭示 Foxa2 小鼠胚胎肝脏发育轨迹。
Commun Biol. 2020 Nov 3;3(1):642. doi: 10.1038/s42003-020-01364-8.
2
Direct transcriptional regulation of Gata4 during early endoderm specification is controlled by FoxA2 binding to an intronic enhancer.FoxA2 通过与内含子增强子结合调控早期内胚层特化过程中 Gata4 的直接转录调控。
Dev Biol. 2010 Oct 15;346(2):346-55. doi: 10.1016/j.ydbio.2010.07.032. Epub 2010 Aug 6.
3
Foxa2-venus fusion reporter mouse line allows live-cell analysis of endoderm-derived organ formation.Foxa2-venus融合报告基因小鼠品系可对内胚层来源器官的形成进行活细胞分析。
Genesis. 2013 Aug;51(8):596-604. doi: 10.1002/dvg.22404. Epub 2013 Jun 26.
4
Endoderm generates endothelial cells during liver development.内胚层在肝脏发育过程中产生内皮细胞。
Stem Cell Reports. 2014 Oct 14;3(4):556-65. doi: 10.1016/j.stemcr.2014.08.009. Epub 2014 Sep 18.
5
The making of the liver: developmental competence in foregut endoderm and induction of the hepatogenic program.肝脏的形成:前肠内胚层的发育能力与肝源性程序的诱导
Cell Cycle. 2005 Sep;4(9):1146-8. doi: 10.4161/cc.4.9.2033. Epub 2005 Sep 15.
6
Mouse hepatoblasts at distinct developmental stages are characterized by expression of EpCAM and DLK1: drastic change of EpCAM expression during liver development.处于不同发育阶段的小鼠肝母细胞以EpCAM和DLK1的表达为特征:肝脏发育过程中EpCAM表达的剧烈变化。
Mech Dev. 2009 Aug-Sep;126(8-9):665-76. doi: 10.1016/j.mod.2009.06.939. Epub 2009 Jun 13.
7
Revising the embryonic origin of thyroid C cells in mice and humans.修正小鼠和人类甲状腺C细胞的胚胎起源。
Development. 2015 Oct 15;142(20):3519-28. doi: 10.1242/dev.126581. Epub 2015 Sep 22.
8
A mouse line expressing Foxa2-driven Cre recombinase in node, notochord, floorplate, and endoderm.一种在节点、脊索、底板和内胚层中表达由Foxa2驱动的Cre重组酶的小鼠品系。
Genesis. 2008 Oct;46(10):515-22. doi: 10.1002/dvg.20410.
9
Expression patterns of Yes-associated protein 1 in the developing mouse liver.Yes相关蛋白1在发育中的小鼠肝脏中的表达模式。
Gene Expr Patterns. 2018 Sep;29:10-17. doi: 10.1016/j.gep.2018.04.003. Epub 2018 Apr 5.
10
Foxa2 regulates polarity and epithelialization in the endoderm germ layer of the mouse embryo.Foxa2调节小鼠胚胎内胚层胚层中的极性和上皮形成。
Development. 2009 Mar;136(6):1029-38. doi: 10.1242/dev.028415.

引用本文的文献

1
Primitive Hepatoblasts Driving Early Liver Development.驱动早期肝脏发育的原始肝母细胞。
bioRxiv. 2025 Jun 8:2025.06.08.658502. doi: 10.1101/2025.06.08.658502.
2
Uncovering codon usage patterns during murine embryogenesis and tissue-specific developmental diseases.揭示小鼠胚胎发育和组织特异性发育疾病过程中的密码子使用模式。
Front Genet. 2025 May 26;16:1554773. doi: 10.3389/fgene.2025.1554773. eCollection 2025.
3
Placental Vascular Defects and Embryonic Lethality Triggered by TFPIα Deficiency in Factor V Leiden Mice.因子V莱顿小鼠中TFPIα缺乏引发的胎盘血管缺陷和胚胎致死性

本文引用的文献

1
CNSA: a data repository for archiving omics data.中国科学院生物多样性委员会:一个用于存储组学数据的数据库。
Database (Oxford). 2020 Jan 1;2020. doi: 10.1093/database/baaa055.
2
The emergent landscape of the mouse gut endoderm at single-cell resolution.单细胞分辨率下的小鼠肠道内胚层的新兴景观。
Nature. 2019 May;569(7756):361-367. doi: 10.1038/s41586-019-1127-1. Epub 2019 Apr 8.
3
The single-cell transcriptional landscape of mammalian organogenesis.哺乳动物器官发生的单细胞转录组图谱。
Arterioscler Thromb Vasc Biol. 2025 Jul;45(7):1266-1276. doi: 10.1161/ATVBAHA.125.322650. Epub 2025 May 22.
4
Transdifferentiation of Integrin Beta 1 High+ Skin Progenitor Cells Into Functional Hepatocytes.整合素β1高表达+皮肤祖细胞向功能性肝细胞的转分化
Stem Cells Int. 2025 Apr 23;2025:8953305. doi: 10.1155/sci/8953305. eCollection 2025.
5
Placenta-derived factors contribute to human iPSC-liver organoid growth.胎盘来源的因子有助于人类诱导多能干细胞来源的肝脏类器官生长。
Nat Commun. 2025 Mar 13;16(1):2493. doi: 10.1038/s41467-025-57551-w.
6
Impaired yolk sac NAD metabolism disrupts murine embryogenesis with relevance to human birth defects.卵黄囊NAD代谢受损会破坏小鼠胚胎发育,并与人类出生缺陷相关。
Elife. 2025 Mar 6;13:RP97649. doi: 10.7554/eLife.97649.
7
Interpretable spatially aware dimension reduction of spatial transcriptomics with STAMP.使用 STAMP 进行空间转录组学的可解释空间感知维度约简。
Nat Methods. 2024 Nov;21(11):2072-2083. doi: 10.1038/s41592-024-02463-8. Epub 2024 Oct 15.
8
Mapping the molecular landscape of Lotus japonicus nodule organogenesis through spatiotemporal transcriptomics.通过时空转录组学绘制百脉根结瘤器官发生的分子图谱。
Nat Commun. 2024 Jul 29;15(1):6387. doi: 10.1038/s41467-024-50737-8.
9
Generation of -like multicellular liver organoids by mimicking developmental processes: A review.通过模拟发育过程生成类多细胞肝脏类器官:综述
Regen Ther. 2024 Jun 8;26:219-234. doi: 10.1016/j.reth.2024.05.020. eCollection 2024 Jun.
10
Fetal liver development and implications for liver disease pathogenesis.胎儿肝脏发育及其对肝脏疾病发病机制的影响。
Nat Rev Gastroenterol Hepatol. 2023 Sep;20(9):561-581. doi: 10.1038/s41575-023-00775-2. Epub 2023 May 19.
Nature. 2019 Feb;566(7745):496-502. doi: 10.1038/s41586-019-0969-x. Epub 2019 Feb 20.
4
A single-cell molecular map of mouse gastrulation and early organogenesis.小鼠原肠胚形成和早期器官发生的单细胞分子图谱
Nature. 2019 Feb;566(7745):490-495. doi: 10.1038/s41586-019-0933-9. Epub 2019 Feb 20.
5
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data.SOAPnuke:一种基于 MapReduce 加速的高通量测序数据集成质量控制和预处理软件。
Gigascience. 2018 Jan 1;7(1):1-6. doi: 10.1093/gigascience/gix120.
6
Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development.单细胞 RNA-Seq 分析揭示了小鼠肝发育过程中的动态轨迹。
BMC Genomics. 2017 Dec 4;18(1):946. doi: 10.1186/s12864-017-4342-x.
7
Reversed graph embedding resolves complex single-cell trajectories.反向图嵌入解析复杂的单细胞轨迹。
Nat Methods. 2017 Oct;14(10):979-982. doi: 10.1038/nmeth.4402. Epub 2017 Aug 21.
8
A single-cell transcriptomic analysis reveals precise pathways and regulatory mechanisms underlying hepatoblast differentiation.单细胞转录组分析揭示了肝母细胞分化背后的精确途径和调控机制。
Hepatology. 2017 Nov;66(5):1387-1401. doi: 10.1002/hep.29353. Epub 2017 Sep 29.
9
A reference human genome dataset of the BGISEQ-500 sequencer.BGISEQ-500测序仪的参考人类基因组数据集。
Gigascience. 2017 May 1;6(5):1-9. doi: 10.1093/gigascience/gix024.
10
The Ensembl gene annotation system.Ensembl基因注释系统。
Database (Oxford). 2016 Jun 23;2016. doi: 10.1093/database/baw093. Print 2016.