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利用临床记录的自然语言处理开发一种预测 HIV 护理保留率的模型。

Development of a predictive model for retention in HIV care using natural language processing of clinical notes.

机构信息

Center for Research Informatics, University of Chicago, Chicago, Illinois, USA.

Department of Medicine, University of Chicago, Chicago, Illinois, USA.

出版信息

J Am Med Inform Assoc. 2021 Jan 15;28(1):104-112. doi: 10.1093/jamia/ocaa220.


DOI:10.1093/jamia/ocaa220
PMID:33150369
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7810456/
Abstract

OBJECTIVE: Adherence to a treatment plan from HIV-positive patients is necessary to decrease their mortality and improve their quality of life, however some patients display poor appointment adherence and become lost to follow-up (LTFU). We applied natural language processing (NLP) to analyze indications towards or against LTFU in HIV-positive patients' notes. MATERIALS AND METHODS: Unstructured lemmatized notes were labeled with an LTFU or Retained status using a 183-day threshold. An NLP and supervised machine learning system with a linear model and elastic net regularization was trained to predict this status. Prevalence of characteristics domains in the learned model weights were evaluated. RESULTS: We analyzed 838 LTFU vs 2964 Retained notes and obtained a weighted F1 mean of 0.912 via nested cross-validation; another experiment with notes from the same patients in both classes showed substantially lower metrics. "Comorbidities" were associated with LTFU through, for instance, "HCV" (hepatitis C virus) and likewise "Good adherence" with Retained, represented with "Well on ART" (antiretroviral therapy). DISCUSSION: Mentions of mental health disorders and substance use were associated with disparate retention outcomes, however history vs active use was not investigated. There remains further need to model transitions between LTFU and being retained in care over time. CONCLUSION: We provided an important step for the future development of a model that could eventually help to identify patients who are at risk for falling out of care and to analyze which characteristics could be factors for this. Further research is needed to enhance this method with structured electronic medical record fields.

摘要

目的:HIV 阳性患者坚持治疗方案对于降低死亡率和提高生活质量至关重要,但有些患者的预约依从性较差,导致失访(LTFU)。我们应用自然语言处理(NLP)分析 HIV 阳性患者病历中提示 LTFU 的特征。

材料和方法:使用 183 天的时间阈值,对未结构化的词干化病历进行 LTFU 或保留状态的标记。采用线性模型和弹性网络正则化的 NLP 和监督机器学习系统来训练预测该状态。评估所学到的模型权重中特征域的普遍性。

结果:我们分析了 838 例 LTFU 与 2964 例保留病历,通过嵌套交叉验证获得加权 F1 均值为 0.912;对同一患者两类病例的另一项实验显示,指标值明显较低。“合并症”与 LTFU 相关,例如“HCV”(丙型肝炎病毒),而“良好的依从性”与保留相关,表现为“ART 治疗效果良好”。

讨论:心理健康障碍和药物使用的提及与不同的保留结果相关,但未研究病史与当前使用情况的关系。仍然需要进一步建立模型,以模拟随时间推移的 LTFU 和持续治疗之间的转换。

结论:我们为未来开发模型迈出了重要一步,该模型最终可能有助于识别有脱离治疗风险的患者,并分析哪些特征可能是导致这种情况的因素。需要进一步研究,以利用结构化电子病历字段增强这种方法。

相似文献

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引用本文的文献

[1]
Comparison of machine learning models to predict loss to follow-up among people with Human Immunodeficiency Virus (HIV).

JAMIA Open. 2025-7-24

[2]
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J Acquir Immune Defic Syndr. 2025-4-3

[3]
Use of machine learning approaches to predict transition of retention in care among people living with HIV in South Carolina: a real-world data study.

AIDS Care. 2024-12

[4]
Demystifying the Role of Natural Language Processing (NLP) in Smart City Applications: Background, Motivation, Recent Advances, and Future Research Directions.

Wirel Pers Commun. 2023

[5]
Emergence and evolution of big data science in HIV research: Bibliometric analysis of federally sponsored studies 2000-2019.

Int J Med Inform. 2021-10

[6]
UbiComb: A Hybrid Deep Learning Model for Predicting Plant-Specific Protein Ubiquitylation Sites.

Genes (Basel). 2021-5-11

[7]
Natural Language Processing of Clinical Notes to Identify Mental Illness and Substance Use Among People Living with HIV: Retrospective Cohort Study.

JMIR Med Inform. 2021-3-10

[8]
Machine Learning and Clinical Informatics for Improving HIV Care Continuum Outcomes.

Curr HIV/AIDS Rep. 2021-6

本文引用的文献

[1]
Using big data analytics to improve HIV medical care utilisation in South Carolina: A study protocol.

BMJ Open. 2019-7-19

[2]
HIV Care Continuum among Postpartum Women Living with HIV in Atlanta.

Infect Dis Obstet Gynecol. 2019-2-14

[3]
Identification of suicidal behavior among psychiatrically hospitalized adolescents using natural language processing and machine learning of electronic health records.

PLoS One. 2019-2-19

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Who Will Show? Predicting Missed Visits Among Patients in Routine HIV Primary Care in the United States.

AIDS Behav. 2019-2

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Beyond binary retention in HIV care: predictors of the dynamic processes of patient engagement, disengagement, and re-entry into care in a US clinical cohort.

AIDS. 2018-9-24

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Health Psychol. 2018-6

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U=U taking off in 2017.

Lancet HIV. 2017-11

[8]
Using Clinical Notes and Natural Language Processing for Automated HIV Risk Assessment.

J Acquir Immune Defic Syndr. 2018-2-1

[9]
Influence of Substance Use Disorders on 2-Year HIV Care Retention in the United States.

AIDS Behav. 2018-3

[10]
Predictors of Adult Retention in HIV Care: A Systematic Review.

AIDS Behav. 2018-3

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