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桑格和靶向富集标记物的组合支持荨麻科(Urticaceae)中棘手的“荨麻属”中修订后的通用界限。

Combination of Sanger and target-enrichment markers supports revised generic delimitation in the problematic 'Urera clade' of the nettle family (Urticaceae).

机构信息

The Royal Botanic Garden Edinburgh, EH3 5NZ, United Kingdom; Oxford University, Department of Plant Sciences, OX1 3RB, United Kingdom.

The Royal Botanic Gardens, Kew, Plant and Fungal Tree of Life (PAFTOL) Team, TW9 3AE, United Kingdom.

出版信息

Mol Phylogenet Evol. 2021 May;158:107008. doi: 10.1016/j.ympev.2020.107008. Epub 2020 Nov 5.

DOI:10.1016/j.ympev.2020.107008
PMID:33160040
Abstract

Urera Gaudich, s.l. is a pantropical genus comprising c. 35 species of trees, shrubs, and vines. It has a long history of taxonomic uncertainty, and is repeatedly recovered as polyphyletic within a poorly resolved complex of genera in the Urticeae tribe of the nettle family (Urticaceae). To provide generic delimitations concordant with evolutionary history, we use increased taxonomic and genomic sampling to investigate phylogenetic relationships among Urera and associated genera. A cost-effective two-tier genome-sampling approach provides good phylogenetic resolution by using (i) a taxon-dense sample of Sanger sequence data from two barcoding regions to recover clades of putative generic rank, and (ii) a genome-dense sample of target-enrichment data for a subset of representative species from each well-supported clade to resolve relationships among them. The results confirm the polyphyly of Urera s.l. with respect to the morphologically distinct genera Obetia, Poikilospermum and Touchardia. Afrotropic members of Urera s.l. are recovered in a clade sister to the xerophytic African shrubs Obetia; and Hawaiian ones with Touchardia, also from Hawaii. Combined with distinctive morphological differences between Neotropical and African members of Urera s.l., these results lead us to resurrect the previously synonymised name Scepocarpus Wedd. for the latter. The new species epiphet Touchardia oahuensis T.Wells & A.K. Monro is offered as a replacement name for Touchardia glabra non H.St.John, and subgenera are created within Urera s.s. to account for the two morphologically distinct Neotropical clades. This new classification minimises taxonomic and nomenclatural disruption, while more accurately reflecting evolutionary relationships within the group.

摘要

格尔蒂亚乌雷拉是一个泛热带属,包含约 35 种乔木、灌木和藤本植物。它在分类学上一直存在很大的不确定性,并且在荨麻科(Urticaceae)的荨麻族(Urticeae)中一个分类关系尚未完全厘清的属的复杂类群中被反复发现为多系群。为了提供与进化历史一致的属的界限,我们使用增加的分类和基因组采样来研究格尔蒂亚乌雷拉属及其相关属之间的系统发育关系。一种具有成本效益的两层基因组采样方法通过使用(i)来自两个条形码区域的密集分类群样本的桑格测序数据来恢复具有假定属级分类群的支系,以及(ii)来自每个支持良好的支系的代表物种的目标富集数据的基因组密集样本,来解决它们之间的关系,从而提供了良好的系统发育分辨率。结果证实了格尔蒂亚乌雷拉属的多系性,涉及形态上明显不同的 Obetia、Poikilospermum 和 Touchardia 属。格尔蒂亚乌雷拉属的热带成员在一个分支中与旱生非洲灌木 Obetia 一起被发现;而夏威夷成员与来自夏威夷的 Touchardia 一起被发现。结合格尔蒂亚乌雷拉属的新热带和非洲成员之间的独特形态差异,这些结果促使我们恢复了以前将 Scepocarpus Wedd. 作为后者的同义词的名称。我们提出了一个新的种名 Touchardia oahuensis T.Wells & A.K. Monro,作为 Touchardia glabra non H.St.John 的替代名,并且在格尔蒂亚乌雷拉属内创建了亚属,以说明两个形态上明显不同的新热带支系。这种新的分类法最大限度地减少了分类学和命名法的混乱,同时更准确地反映了该组内的进化关系。

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