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评估溶剂化的聚类模型以描述振动圆二色性光谱:静态和动态方法的协同作用。

Assessing cluster models of solvation for the description of vibrational circular dichroism spectra: synergy between static and dynamic approaches.

机构信息

Institut des Sciences Moléculaires d'Orsay (ISMO), CNRS, Université Paris-Saclay, F-91405 Orsay, France.

出版信息

Phys Chem Chem Phys. 2020 Nov 25;22(45):26047-26068. doi: 10.1039/d0cp03869e.

Abstract

Solvation effects are essential for defining the shape of vibrational circular dichroism (VCD) spectra. Several approaches have been proposed to include them into computational models for calculating VCD signals, in particular those resting on the "cluster-in-a-liquid" model. Here we examine the capabilities of this ansatz on the example of flexible (1S,2S)-trans-1-amino-2-indanol solvated in dimethyl sulfoxide (DMSO). We compare cluster sets obtained from static calculations with results from explicit molecular dynamics (MD) trajectories based on either force field (FF) or first-principles (FP) methods. While the FFMD approach provides a broader sampling of configurational space, FPMD and time-correlation functions of dipole moments account for anharmonicity and entropy effects in the VCD calculation. They provide a means to evaluate the immediate effect of the solvent on the spectrum. This survey singles out several challenges associated with the use of clusters to describe solvation effects in systems showing shallow potential energy surfaces and non-covalent interactions. Static structures of clusters involving a limited number of solvent molecules satisfactorily capture the main effects of solvation in the bulk limit on the VCD spectra, if these structures are correctly weighted. The importance of taking into consideration their fluxionality, i.e. different solvent conformations sharing a same hydrogen bond pattern, and the limitations of small clusters for describing the solvent dynamics are discussed.

摘要

溶剂化效应对确定振动圆二色性(VCD)光谱的形状至关重要。已经提出了几种方法将其纳入计算 VCD 信号的计算模型中,特别是那些基于“液体中的团簇”模型的方法。在这里,我们以在二甲亚砜(DMSO)中溶剂化的柔性(1S,2S)-反式-1-氨基-2-吲哚醇为例,检验了该方法的能力。我们将从静态计算中获得的团簇集与基于力场(FF)或第一性原理(FP)方法的显式分子动力学(MD)轨迹的结果进行了比较。虽然 FFMD 方法提供了更广泛的构象空间采样,但 FP-MD 和偶极矩的时间相关函数可以在 VCD 计算中考虑非谐性和熵效应。它们提供了一种评估溶剂对光谱的直接影响的方法。该研究突出了在使用团簇描述具有浅势能表面和非共价相互作用的系统中的溶剂化效应时所涉及的几个挑战。如果正确加权,涉及有限数量溶剂分子的团簇的静态结构可以很好地捕获在 VCD 光谱中在本体极限下的溶剂化的主要影响。讨论了考虑其流动性(即共享相同氢键模式的不同溶剂构象)的重要性,以及小团簇在描述溶剂动力学方面的局限性。

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