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小麦中R2R3-MYB家族的全基因组鉴定及非生物胁迫响应基因TaMYB344的功能特性

Genome-wide identification of R2R3-MYB family in wheat and functional characteristics of the abiotic stress responsive gene TaMYB344.

作者信息

Wei Qiuhui, Chen Rong, Wei Xin, Liu Yuheng, Zhao Shujuan, Yin Xiaopu, Xie Tian

机构信息

Key Laboratory of Elemene Class Anti-cancer Chinese Medicine of Zhejiang Province, Engineering Laboratory of Development and Application of Traditional Chinese Medicine from Zhejiang Province, Holistic Integrative Pharmacy Institutes, School of Medicine, Hangzhou Normal University, No.2318 Yuhangtang Road, Hangzhou, 311121, People's Republic of China.

出版信息

BMC Genomics. 2020 Nov 12;21(1):792. doi: 10.1186/s12864-020-07175-9.

Abstract

BACKGROUND

MYB superfamily is one of the most abundant families in plants, which plays important roles in plant growth, development, and productivity. However, to date, researches on MYBs in wheat (Triticum aestivum L.) are scattered mostly, not comprehensive.

RESULTS

In this study, a total of 393 R2R3-MYBs and 12 R1R2R3-MYBs were identified and analyzed including gene structure, chromosomal distribution, synteny relationship, and evolutionary relationship. Then, 29 clusters tandem duplication and 8 clusters segmental duplication genes were discovered. The expression profile of the identified genes under abiotic and biotic stress was analyzed using RNA-seq data. Based on expression patterns analysis, we screened many candidate genes involved in plant response to abiotic and biotic stress. Among them, the functional characteristics of TaMYB344 were further studied. TaMYB344 was localized in the nucleus and functioned as a weak transcriptional activator. We demonstrated that TaMYB344-overexpressing transgenic tobacco plants had enhanced tolerance to drought, heat, and high salt stress.

CONCLUSIONS

In this study, 393 R2R3-MYBs and 12 R1R2R3-MYBs in wheat were systemically identified and analyzed. Differential expression analysis indicated that many R2R3-MYBs were involved in abiotic and biotic stress response. We identified a potential candidate gene TaMYB344, overexpression of which in tobacco plants enhanced drought, heat, and salt stress tolerance. These results will provide abundant molecular data for breeding new varieties of wheat in the future.

摘要

背景

MYB 超家族是植物中最为丰富的家族之一,在植物生长、发育及生产力方面发挥着重要作用。然而,迄今为止,关于小麦(Triticum aestivum L.)中 MYB 的研究大多较为分散,不够全面。

结果

在本研究中,共鉴定并分析了 393 个 R2R3-MYB 和 12 个 R1R2R3-MYB,内容包括基因结构、染色体分布、共线性关系及进化关系。随后,发现了 29 个串联重复基因簇和 8 个片段重复基因簇。利用 RNA-seq 数据对鉴定出的基因在非生物和生物胁迫下的表达谱进行了分析。基于表达模式分析,筛选出了许多参与植物对非生物和生物胁迫响应的候选基因。其中,对 TaMYB344 的功能特性进行了进一步研究。TaMYB344 定位于细胞核,并作为一种弱转录激活因子发挥作用。我们证明,过表达 TaMYB344 的转基因烟草植株对干旱、高温和高盐胁迫的耐受性增强。

结论

本研究对小麦中的 393 个 R2R3-MYB 和 12 个 R1R2R3-MYB 进行了系统鉴定和分析。差异表达分析表明,许多 R2R3-MYB 参与了非生物和生物胁迫响应。我们鉴定出一个潜在的候选基因 TaMYB344,其在烟草植株中的过表达增强了对干旱、高温和盐胁迫的耐受性。这些结果将为未来小麦新品种培育提供丰富的分子数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a6f/7659103/f36703c2453c/12864_2020_7175_Fig1_HTML.jpg

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