Office of Industry-Academia-Government and Community Collaboration, Hiroshima University, 1-3-2 Kagamiyama, Higashi-Hiroshima City, Hiroshima, 739-8511, Japan.
Center for holobiome and built Environment (CHOBE), Hiroshima University, 1-3-2 Kagamiyama, Higashi-Hiroshima City, Hiroshima, 739-8511, Japan.
Environ Sci Pollut Res Int. 2021 Mar;28(11):14144-14155. doi: 10.1007/s11356-020-11567-5. Epub 2020 Nov 18.
Phytoplankton blooms, including harmful algal blooms (HABs), have serious impacts on ecosystems, public health, and productivity activities. Rapid detection and monitoring of marine microalgae are important in predicting and managing HABs. We developed a toolkit, the Suitcase Lab, to detect harmful algae species in the field. We demonstrated the Suitcase Lab's capabilities for sampling, filtration, DNA extraction, and loop-mediated isothermal amplification (LAMP) detection in cultured Alexandrium catenella cells as well as Chilean coastal waters from four sites: Repollal, Isla García, Puerto Montt, and Metri. A LAMP assay using the Suitcase Lab in the field confirmed microscopic observations of A. catenella in samples from Repollal and Isla García. The Suitcase Lab allowed the rapid detection of A. catenella, within 2 h from the time of sampling, even at a single cell per milliliter concentrations, demonstrating its usefulness for quick and qualitative on-site diagnosis of target toxic algae species. This method is applicable not only to detecting harmful algae but also to other field studies that seek a rapid molecular diagnostic test.
浮游植物水华,包括有害藻类水华(HABs),对生态系统、公共健康和生产力活动都有严重影响。快速检测和监测海洋微藻对于预测和管理 HABs 非常重要。我们开发了一个工具包,即手提箱实验室,用于在现场检测有害藻类物种。我们展示了手提箱实验室在培养的亚历山大藻细胞以及智利四个地点的沿海水域(Repollal、Isla García、Puerto Montt 和 Metri)中的采样、过滤、DNA 提取和环介导等温扩增(LAMP)检测的能力。在现场使用手提箱实验室进行的 LAMP 检测证实了在 Repollal 和 Isla García 样本中观察到的亚历山大藻的微观特征。即使在每毫升只有一个细胞的浓度下,手提箱实验室也能在采样后 2 小时内快速检测到亚历山大藻,证明了它在快速定性现场诊断目标有毒藻类物种方面的有用性。该方法不仅适用于检测有害藻类,还适用于其他寻求快速分子诊断测试的现场研究。