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利用免疫相关基因构建肾上腺皮质癌风险特征

Construction of a risk signature for adrenocortical carcinoma using immune-related genes.

作者信息

Fu Yang, Sun Shanshan, Bi Jianbin, Kong Chuize

机构信息

Department of Urology, The First Hospital of China Medical University, Shenyang, China.

Department of Pharmacy, The First Hospital of China Medical University, Shenyang, China.

出版信息

Transl Androl Urol. 2020 Oct;9(5):1920-1930. doi: 10.21037/tau-20-485.

Abstract

BACKGROUND

Adrenocortical carcinoma (ACC) is considered a rare tumor with a dismal prognosis. Expression of immune-related genes (IRGs) in ACC and correlations between IRGs and ACC prognosis were assessed using The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases.

METHODS

To preliminarily predict immune cell infiltration, an immune score was calculated using ESTIMATE. Differentially expressed IRGs were screened, and potential biological functions were investigated. We then performed univariate Cox regression to identify IRGs associated with survival, and the regulatory mechanisms of IRGs associated with survival were predicted. We built a risk signature through multivariate Cox regression to evaluate patient overall survival (OS).

RESULTS

A high immune score predicted a good prognosis and an early clinical stage in ACC. We identified 30 IRGs associated with survival and then predicted associated regulatory mechanisms via protein-protein interaction (PPI) and transcription factor (TF) regulatory networks. The risk signature established by multivariate Cox regression correlated significantly with prognosis in ACC.

CONCLUSIONS

The vital roles of IRGs in ACC were assessed, and the risk signature obtained based on IRGs associated with survival independently predicted ACC prognosis.

摘要

背景

肾上腺皮质癌(ACC)被认为是一种预后不良的罕见肿瘤。使用癌症基因组图谱(TCGA)和基因型-组织表达(GTEx)数据库评估了ACC中免疫相关基因(IRG)的表达以及IRG与ACC预后之间的相关性。

方法

为了初步预测免疫细胞浸润,使用ESTIMATE计算免疫评分。筛选差异表达的IRG,并研究其潜在的生物学功能。然后进行单变量Cox回归以鉴定与生存相关的IRG,并预测与生存相关的IRG的调控机制。我们通过多变量Cox回归建立了一个风险特征,以评估患者的总生存期(OS)。

结果

高免疫评分预示着ACC的预后良好和临床分期较早。我们鉴定了30个与生存相关的IRG,然后通过蛋白质-蛋白质相互作用(PPI)和转录因子(TF)调控网络预测相关的调控机制。多变量Cox回归建立的风险特征与ACC的预后显著相关。

结论

评估了IRG在ACC中的重要作用,基于与生存相关的IRG获得的风险特征独立预测了ACC的预后。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4dc1/7658150/07d4566da980/tau-09-05-1920-f1.jpg

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