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产气荚膜梭菌β毒素与P2X7受体的分子对接分析

Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens.

作者信息

Solanki Amit Kumar, Panwar Deepak, Kaushik Himani, Garg Lalit C

机构信息

National Institute of Immunology, New Delhi - 110067, India.

出版信息

Bioinformation. 2020 Aug 31;16(8):594-601. doi: 10.6026/97320630016594. eCollection 2020.

Abstract

Clostridium perfringens beta-toxin (CPB) is linked to necrotic enteritis (over proliferation of bacteria) in several species showing cytotoxic effect on primary porcine endothelial and human precursor immune cells. P2X7 receptor on THP-1 cells is known to bind CPB. This is critical to understand the mechanism of pore formation for effective drug design. The structure of CPB and P2X7 receptor proteins were modeled using standard molecular modeling procedures (I-TASSER and Robetta server). This is followed by protein-protein docking (HADDOCK server) to study their molecular interaction. Interacting residues (19 residues from CPB and 21 residues from P2X7) were identified using the PISA server. Thus, we document the molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens towards drug design and development of drugs to control necrotic enteritis.

摘要

产气荚膜梭菌β毒素(CPB)与多种物种的坏死性肠炎(细菌过度增殖)有关,对原代猪内皮细胞和人类前体免疫细胞具有细胞毒性作用。已知THP-1细胞上的P2X7受体可结合CPB。这对于理解有效药物设计的孔形成机制至关重要。使用标准分子建模程序(I-TASSER和Robetta服务器)对CPB和P2X7受体蛋白的结构进行建模。随后进行蛋白质-蛋白质对接(HADDOCK服务器)以研究它们的分子相互作用。使用PISA服务器鉴定相互作用的残基(来自CPB的19个残基和来自P2X7的21个残基)。因此,我们记录了P2X7受体与产气荚膜梭菌β毒素的分子对接分析,以用于药物设计和开发控制坏死性肠炎的药物。

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