Mancuso Francesca, De Luca Laura, Angeli Andrea, Berrino Emanuela, Del Prete Sonia, Capasso Clemente, Supuran Claudiu T, Gitto Rosaria
Dipartimento di Scienze Chimiche, Biologiche, Farmaceutiche ed Ambientali (CHIBIOFARAM), Università degli Studi di Messina, Viale Palatucci 13, I-98168 Messina, Italy.
Dipartimento NEUROFARBA, Università di Firenze, Via Ugo Schiff, I-50019 Sesto Fiorentino, Italy.
ACS Med Chem Lett. 2020 Sep 1;11(11):2294-2299. doi: 10.1021/acsmedchemlett.0c00417. eCollection 2020 Nov 12.
Carbonic anhydrases from (VchCAs) play a significant role in bacterial pathophysiological processes. Therefore, their inhibition leads to a reduction of gene expression virulence and bacterial growth impairment. Herein, we report the first ligand-based pharmacophore model as a computational tool to study selective inhibitors of the β-class of VchCA. By a virtual screening on a collection of sulfonamides, we retrieved 9 compounds that were synthesized and evaluated for their inhibitory effects against VchCAβ as well as α- and γ-classes of VchCAs and selectivity over human ubiquitous isoforms hCA I and II. Notably, all tested compounds were active inhibitors of VchCAs. The -(4-sulfamoylbenzyl)-[1,1'-biphenyl]-4-carboxamide () stood out as the most exciting inhibitor toward the β-class ( = 95.6 nM), also showing a low affinity against the tested human isoforms. By applying docking procedures, we described the binding mode of the inhibitor within the catalytic cavity of the modeled open conformation of VchCAβ.
来自[具体来源未提及]的碳酸酐酶(VchCAs)在细菌病理生理过程中发挥着重要作用。因此,对它们的抑制会导致基因表达毒力降低和细菌生长受损。在此,我们报告首个基于配体的药效团模型,作为一种计算工具来研究VchCAβ类的选择性抑制剂。通过对一系列磺胺类化合物进行虚拟筛选,我们获得了9种化合物,对其进行了合成,并评估了它们对VchCAβ以及VchCAs的α类和γ类的抑制作用,以及对人类普遍存在的同工型hCA I和II的选择性。值得注意的是,所有测试化合物都是VchCAs的活性抑制剂。(4-氨磺酰苄基)-[1,1'-联苯]-4-甲酰胺([具体化合物名称未提及])作为对β类最具吸引力的抑制剂脱颖而出(IC₅₀ = 95.6 nM),对测试的人类同工型也显示出低亲和力。通过应用对接程序,我们描述了抑制剂[具体化合物名称未提及]在VchCAβ模拟开放构象催化腔内的结合模式。