• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

外源性干扰如何影响细胞色素 P450 OleT 对底物激活的化学选择性。

How external perturbations affect the chemoselectivity of substrate activation by cytochrome P450 OleT.

机构信息

Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.

出版信息

Phys Chem Chem Phys. 2020 Dec 7;22(46):27178-27190. doi: 10.1039/d0cp05169a.

DOI:10.1039/d0cp05169a
PMID:33226036
Abstract

Cytochrome P450 enzymes are versatile biocatalysts found in most forms of life. Generally, the cytochrome P450s react with dioxygen and hence are haem-based mono-oxygenases; however, in specific isozymes, H2O2 rather than O2 is used and these P450s act as peroxygenases. The P450 OleTJE is a peroxygenase that binds long to medium chain fatty acids and converts them to a range of products originating from Cα-hydroxylation, Cβ-hydroxylation, Cα-Cβ desaturation and decarboxylation of the substrate. There is still controversy regarding the details of the reaction mechanism of P450 OleTJE; how the products are formed and whether the product distributions can be influenced by external perturbations. To gain further insights into the structure and reactivity of P450 OleTJE, we set up a range of large active site model complexes as well as full enzymatic structures and did a combination of density functional theory studies and quantum mechanics/molecular mechanics calculations. In particular, the work focused on the mechanisms leading to these products under various reaction conditions. Thus, for a small cluster model, we find a highly selective Cα-hydroxylation pathway that is preferred over Cβ-H hydrogen atom abstraction by at least 10 kcal mol-1. Introduction of polar residues to the model, such as an active site protonated histidine residue or through external electric field effects, lowers the Cβ-H hydrogen atom abstraction barriers are lowered, while a full QM/MM model brings the Cα-H and Cβ-H hydrogen atom abstraction barriers within 1 kcal mol-1. Our studies; therefore, implicate that environmental effects in the second-coordination sphere can direct and guide selectivities in enzymatic reaction mechanisms.

摘要

细胞色素 P450 酶是一种多功能生物催化剂,存在于大多数生命形式中。一般来说,细胞色素 P450 与双分子氧反应,因此是基于血红素的单加氧酶;然而,在特定的同工酶中,使用的是 H2O2 而不是 O2,这些 P450 作为过氧化物酶发挥作用。P450 OleTJE 是一种过氧化物酶,它与长链到中链脂肪酸结合,并将其转化为一系列产物,这些产物来源于 Cα-羟化、Cβ-羟化、Cα-Cβ 去饱和和底物的脱羧。关于 P450 OleTJE 的反应机制的细节仍存在争议;产物是如何形成的,以及产物分布是否可以受到外部干扰的影响。为了更深入地了解 P450 OleTJE 的结构和反应性,我们建立了一系列大的活性位点模型配合物以及完整的酶结构,并进行了密度泛函理论研究和量子力学/分子力学计算的组合。特别是,这项工作侧重于在各种反应条件下导致这些产物的机制。因此,对于一个小的团簇模型,我们发现了一种高度选择性的 Cα-羟化途径,其选择性至少比 Cβ-H 氢原子提取高 10 kcal mol-1。在模型中引入极性残基,如活性位点质子化组氨酸残基或通过外部电场效应,可以降低 Cβ-H 氢原子提取的势垒,而全 QM/MM 模型则使 Cα-H 和 Cβ-H 氢原子提取的势垒相差 1 kcal mol-1。因此,我们的研究表明,第二配位球中的环境效应可以指导和引导酶反应机制中的选择性。

相似文献

1
How external perturbations affect the chemoselectivity of substrate activation by cytochrome P450 OleT.外源性干扰如何影响细胞色素 P450 OleT 对底物激活的化学选择性。
Phys Chem Chem Phys. 2020 Dec 7;22(46):27178-27190. doi: 10.1039/d0cp05169a.
2
Bioengineering of Cytochrome P450 OleT: How Does Substrate Positioning Affect the Product Distributions?细胞色素 P450 OleT 的生物工程:底物定位如何影响产物分布?
Molecules. 2020 Jun 9;25(11):2675. doi: 10.3390/molecules25112675.
3
Catalytic Determinants of Alkene Production by the Cytochrome P450 Peroxygenase OleT.细胞色素P450过氧酶OleT产生烯烃的催化决定因素
J Biol Chem. 2017 Mar 24;292(12):5128-5143. doi: 10.1074/jbc.M116.762336. Epub 2017 Jan 4.
4
Product Distributions of Cytochrome P450 OleT with Phenyl-Substituted Fatty Acids: A Computational Study.细胞色素 P450 OleT 与苯基取代脂肪酸的产物分布:计算研究。
Int J Mol Sci. 2021 Jul 2;22(13):7172. doi: 10.3390/ijms22137172.
5
Structure and biochemical properties of the alkene producing cytochrome P450 OleTJE (CYP152L1) from the Jeotgalicoccus sp. 8456 bacterium.烯生产细胞色素 P450 OleTJE(CYP152L1)的结构和生化特性来自 Jeotgalicoccus sp. 8456 细菌。
J Biol Chem. 2014 Mar 7;289(10):6535-6550. doi: 10.1074/jbc.M113.527325. Epub 2014 Jan 18.
6
Origin of the Regioselective Fatty-Acid Hydroxylation versus Decarboxylation by a Cytochrome P450 Peroxygenase: What Drives the Reaction to Biofuel Production?细胞色素P450过氧合酶区域选择性脂肪酸羟基化与脱羧反应的起源:是什么驱动了生物燃料生产反应?
Chemistry. 2016 Apr 11;22(16):5478-83. doi: 10.1002/chem.201600739. Epub 2016 Mar 22.
7
Drug metabolism by cytochrome p450 enzymes: what distinguishes the pathways leading to substrate hydroxylation over desaturation?细胞色素P450酶介导的药物代谢:导致底物羟基化而非去饱和的途径有何不同?
Chemistry. 2015 Jun 15;21(25):9083-92. doi: 10.1002/chem.201500329. Epub 2015 Apr 29.
8
Unexpected Reactions of α,β-Unsaturated Fatty Acids Provide Insight into the Mechanisms of CYP152 Peroxygenases.α,β-不饱和脂肪酸的意外反应为 CYP152 加氧酶的作用机制提供了新的见解。
Angew Chem Int Ed Engl. 2021 Nov 8;60(46):24694-24701. doi: 10.1002/anie.202111163. Epub 2021 Oct 12.
9
Is the bound substrate in nitric oxide synthase protonated or neutral and what is the active oxidant that performs substrate hydroxylation?一氧化氮合酶中的结合底物是质子化的还是中性的,以及进行底物羟基化的活性氧化剂是什么?
J Am Chem Soc. 2008 Oct 1;130(39):12961-74. doi: 10.1021/ja8010995. Epub 2008 Sep 6.
10
Expanding the substrate scope and reactivity of cytochrome P450 OleT.扩展细胞色素P450 OleT的底物范围和反应活性。
Biochem Biophys Res Commun. 2016 Aug 5;476(4):462-466. doi: 10.1016/j.bbrc.2016.05.145. Epub 2016 May 28.

引用本文的文献

1
Regulation of ferryl reactivity by the cytochrome P450 decarboxylase OleT.细胞色素P450脱羧酶OleT对高铁血红素反应性的调控
J Inorg Biochem. 2025 Sep;270:112912. doi: 10.1016/j.jinorgbio.2025.112912. Epub 2025 Apr 4.
2
Phenylalanine Residues in the Active Site of CYP2E1 Participate in Determining the Binding Orientation and Metabolism-Dependent Genotoxicity of Aromatic Compounds.细胞色素P450 2E1活性位点中的苯丙氨酸残基参与确定芳香族化合物的结合方向和代谢依赖性遗传毒性。
Toxics. 2023 May 31;11(6):495. doi: 10.3390/toxics11060495.
3
Product Distributions of Cytochrome P450 OleT with Phenyl-Substituted Fatty Acids: A Computational Study.
细胞色素 P450 OleT 与苯基取代脂肪酸的产物分布:计算研究。
Int J Mol Sci. 2021 Jul 2;22(13):7172. doi: 10.3390/ijms22137172.