用于构建新型标志物并预测人类肝细胞癌免疫格局的免疫相关长链非编码RNA

Immune-Related lncRNA to Construct Novel Signature and Predict the Immune Landscape of Human Hepatocellular Carcinoma.

作者信息

Hong Weifeng, Liang Li, Gu Yujun, Qi Zhenhua, Qiu Haibo, Yang Xiaosong, Zeng Weian, Ma Liheng, Xie Jingdun

机构信息

Department of Medical Imaging, The First Affiliated Hospital of Guangdong Pharmaceutical University, Guangzhou, Guangdong 510000, China.

Departments of Medical Oncology, Zhongshan Hospital of Fudan University, Shanghai 200032, China.

出版信息

Mol Ther Nucleic Acids. 2020 Oct 10;22:937-947. doi: 10.1016/j.omtn.2020.10.002. eCollection 2020 Dec 4.

Abstract

The signature composed of immune-related long noncoding ribonucleic acids (irlncRNAs) with no requirement of specific expression level seems to be valuable in predicting the survival of patients with hepatocellular carcinoma (HCC). Here, we retrieved raw transcriptome data from The Cancer Genome Atlas (TCGA), identified irlncRNAs by co-expression analysis, and recognized differently expressed irlncRNA (DEirlncRNA) pairs using univariate analysis. In addition, we modified Lasso penalized regression. Then, we compared the areas under curve, counted the Akaike information criterion (AIC) values of 5-year receiver operating characteristic curve, and identified the cut-off point to set up an optimal model for distinguishing the high- or low-disease-risk groups among patients with HCC. We then reevaluated them from the viewpoints of survival, clinic-pathological characteristics, tumor-infiltrating immune cells, chemotherapeutics efficacy, and immunosuppressed biomarkers. 36 DEirlncRNA pairs were identified, 12 of which were included in a Cox regression model. After regrouping the patients by the cut-off point, we could more effectively differentiate between them based on unfavorable survival outcome, aggressive clinic-pathological characteristics, specific tumor immune infiltration status, low chemotherapeutics sensitivity, and highly expressed immunosuppressed biomarkers. The signature established by paring irlncRNA regardless of expression levels showed a promising clinical prediction value.

摘要

由免疫相关长链非编码核糖核酸(irlncRNAs)组成的特征,无需特定表达水平,似乎在预测肝细胞癌(HCC)患者的生存方面具有价值。在此,我们从癌症基因组图谱(TCGA)中检索原始转录组数据,通过共表达分析鉴定irlncRNAs,并使用单变量分析识别差异表达的irlncRNA(DEirlncRNA)对。此外,我们修改了套索惩罚回归。然后,我们比较曲线下面积,计算5年受试者工作特征曲线的赤池信息准则(AIC)值,并确定截断点以建立区分HCC患者高疾病风险组或低疾病风险组的最佳模型。然后,我们从生存、临床病理特征、肿瘤浸润免疫细胞、化疗疗效和免疫抑制生物标志物的角度对它们进行重新评估。共鉴定出36对DEirlncRNA,其中12对被纳入Cox回归模型。根据截断点对患者重新分组后,我们可以根据不良生存结果、侵袭性临床病理特征、特定肿瘤免疫浸润状态、低化疗敏感性和高表达的免疫抑制生物标志物更有效地区分他们。无论表达水平如何,通过配对irlncRNA建立的特征显示出有前景的临床预测价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acb/7670249/b03edfdd2400/fx1.jpg

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