Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Computational Oncology Group, I. M. Sechenov First Moscow State Medical University, Moscow 119146, Russia.
Nucleic Acids Res. 2020 Dec 16;48(22):12534-12555. doi: 10.1093/nar/gkaa1126.
Guanine-quadruplexes (G4s) are non-canonical four-stranded structures that can be formed in guanine (G) rich nucleic acid sequences. A great number of G-rich sequences capable of forming G4 structures have been described based on in vitro analysis, and evidence supporting their formation in live cells continues to accumulate. While formation of DNA G4s (dG4s) within chromatin in vivo has been supported by different chemical, imaging and genomic approaches, formation of RNA G4s (rG4s) in vivo remains a matter of discussion. Recent data support the dynamic nature of G4 formation in the transcriptome. Such dynamic fluctuation of rG4 folding-unfolding underpins the biological significance of these structures in the regulation of RNA metabolism. Moreover, rG4-mediated functions may ultimately be connected to mechanisms underlying disease pathologies and, potentially, provide novel options for therapeutics. In this framework, we will review the landscape of rG4s within the transcriptome, focus on their potential impact on biological processes, and consider an emerging connection of these functions in human health and disease.
鸟嘌呤四链体 (G4s) 是非经典的四链结构,可以在富含鸟嘌呤 (G) 的核酸序列中形成。大量能够形成 G4 结构的富含 G 的序列已经基于体外分析进行了描述,并且支持它们在活细胞中形成的证据不断积累。虽然体内染色质中 DNA G4s (dG4s) 的形成已经得到了不同的化学、成像和基因组方法的支持,但体内 RNA G4s (rG4s) 的形成仍然存在争议。最近的数据支持转录组中 G4 形成的动态性质。这种 rG4 折叠-展开的动态波动为这些结构在调节 RNA 代谢中的生物学意义提供了基础。此外,rG4 介导的功能最终可能与疾病病理学的机制相关联,并可能为治疗提供新的选择。在这个框架内,我们将综述转录组中 rG4s 的全景,重点关注它们对生物过程的潜在影响,并考虑这些功能在人类健康和疾病中的新兴联系。