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深入研究 SARS-CoV-2 蛋白信息,设计一种既包含 T 细胞表位又包含 B 细胞表位的有效疫苗。

Scrutinizing the SARS-CoV-2 protein information for designing an effective vaccine encompassing both the T-cell and B-cell epitopes.

机构信息

Discipline of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Simrol, Indore 453552, India.

Discipline of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Simrol, Indore 453552, India.

出版信息

Infect Genet Evol. 2021 Jan;87:104648. doi: 10.1016/j.meegid.2020.104648. Epub 2020 Nov 29.

Abstract

Novel SARS coronavirus (SARS-CoV-2) has caused a pandemic condition worldwide. It has been declared as a public health emergency of international concern by WHO in a very short span of time. The community transmission of this highly infectious virus has severely affected various parts of China, Italy, Spain, India, and USA, among others. The prophylactic solution against SARS-CoV-2 infection is challenging due to the high mutation rate of its RNA genome. Herein, we exploited a next-generation vaccinology approach to construct a multi-epitope vaccine candidate against SARS-CoV-2 that is predicted to have high antigenicity, safety, and efficacy to combat this deadly infectious agent. The whole proteome was scrutinized for the screening of highly conserved, antigenic, non-allergen, and non-toxic epitopes having high population coverage that can elicit both humoral and cellular mediated immune response against COVID-19 infection. These epitopes along with four different adjuvants, were utilized to construct a multi-epitope-vaccine candidate that can generate strong immunological memory response having high efficacy in humans. Various physiochemical analyses revealed the formation of a stable vaccine product having a high propensity to form a protective solution against the detrimental SARS-CoV-2 strain with high efficacy. The vaccine candidate interacted with immunological receptor TLR3 with a high affinity depicting the generation of innate immunity. Further, the codon optimization and in silico expression show the plausibility of the high expression and easy purification of the vaccine product. Thus, this present study provides an initial platform for the rapid generation of an efficacious protective vaccine for combating COVID-19.

摘要

新型严重急性呼吸综合征冠状病毒(SARS-CoV-2)已在全球范围内引发大流行。世界卫生组织(WHO)在很短的时间内宣布其为国际关注的突发公共卫生事件。这种高度传染性病毒的社区传播已严重影响了中国、意大利、西班牙、印度和美国等其他国家的各个地区。由于其 RNA 基因组的高突变率,针对 SARS-CoV-2 感染的预防性解决方案具有挑战性。在此,我们利用下一代疫苗学方法来构建针对 SARS-CoV-2 的多表位疫苗候选物,该候选物预计具有高抗原性、安全性和功效,可对抗这种致命的传染性病原体。对整个蛋白质组进行了筛选,以筛选高度保守、具有抗原性、非变应原性和无毒的表位,这些表位具有高人群覆盖率,可引发针对 COVID-19 感染的体液和细胞介导的免疫反应。这些表位与四种不同的佐剂一起,用于构建多表位疫苗候选物,该候选物可产生强烈的免疫记忆反应,对人类具有高功效。各种物理化学分析表明,形成了一种稳定的疫苗产品,具有很高的倾向,可以针对具有高功效的有害 SARS-CoV-2 株形成保护性溶液。候选疫苗与免疫受体 TLR3 具有高亲和力相互作用,表明先天免疫的产生。此外,密码子优化和计算机表达表明疫苗产品具有高表达和易于纯化的可能性。因此,本研究为快速生成针对 COVID-19 的有效保护性疫苗提供了一个初步平台。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6021/7700730/3f8390d94924/ga1_lrg.jpg

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