一株产志贺毒素大肠杆菌O26:H11菌株（序列型21）的全基因组序列以及从德国新鲜农产品中分离出的两株单核细胞增生李斯特菌菌株（克隆复合体1 [CC1]和CC59）的基因组草图序列。
Complete Genome Sequence of a Shiga Toxin-Producing Escherichia coli O26:H11 Strain (Sequence Type 21) and Two Draft Genome Sequences of Listeria monocytogenes Strains (Clonal Complex 1 [CC1] and CC59) Isolated from Fresh Produce in Germany.
作者信息
Fiedler Gregor, Kabisch Jan, Brinks Erik, Sprotte Sabrina, Boehnlein Christina, Franz Charles M A P
机构信息
Department of Microbiology and Biotechnology, Max Rubner-Institut (Federal Research Institute of Nutrition and Food), Kiel, Germany.
Department of Microbiology and Biotechnology, Max Rubner-Institut (Federal Research Institute of Nutrition and Food), Kiel, Germany
出版信息
Microbiol Resour Announc. 2020 Dec 3;9(49):e00973-20. doi: 10.1128/MRA.00973-20.
Abstract
The complete genome sequence of a Shiga toxin-producing (STEC) O26:H11 strain, MBT-5 (sequence type 21 [ST21], , , , ), and two draft genome sequences of strains MBT-6 and MBT-7 belonging to the virulent sequence types 1 (ST1, clonal complex 1 [CC1]) and 59 (ST59, CC59), respectively, were determined. The strains were isolated in 2015 from ready-to-eat mixed greens in Germany.
摘要
一株产志贺毒素的O26:H11菌株MBT-5（序列类型21 [ST21]）以及分别属于强毒序列类型1（ST1，克隆复合体1 [CC1]）和59（ST59，CC59）的菌株MBT-6和MBT-7的两个基因组草图序列被测定。这些菌株于2015年从德国的即食混合蔬菜中分离得到。
相似文献
1
Complete Genome Sequence of a Shiga Toxin-Producing Escherichia coli O26:H11 Strain (Sequence Type 21) and Two Draft Genome Sequences of Listeria monocytogenes Strains (Clonal Complex 1 [CC1] and CC59) Isolated from Fresh Produce in Germany.一株产志贺毒素大肠杆菌O26:H11菌株（序列型21）的全基因组序列以及从德国新鲜农产品中分离出的两株单核细胞增生李斯特菌菌株（克隆复合体1 [CC1]和CC59）的基因组草图序列。
Microbiol Resour Announc. 2020 Dec 3;9(49):e00973-20. doi: 10.1128/MRA.00973-20.
2
Characterization of the Shiga toxin-producing Escherichia coli O26 isolated from human in Poland between 1996 and 2014.1996年至2014年间从波兰人类身上分离出的产志贺毒素大肠杆菌O26的特性研究。
Lett Appl Microbiol. 2015 Jun;60(6):605-8. doi: 10.1111/lam.12413. Epub 2015 Apr 8.
3
Diversity of Shiga Toxin-Producing Escherichia coli (STEC) O26:H11 Strains Examined via stx Subtypes and Insertion Sites of Stx and EspK Bacteriophages.通过stx亚型以及Stx和EspK噬菌体的插入位点对产志贺毒素大肠杆菌（STEC）O26:H11菌株的多样性进行检测。
Appl Environ Microbiol. 2015 Jun;81(11):3712-21. doi: 10.1128/AEM.00077-15. Epub 2015 Mar 27.
4
Virulence Gene Profiles and Clonal Relationships of Escherichia coli O26:H11 Isolates from Feedlot Cattle as Determined by Whole-Genome Sequencing.通过全基因组测序确定的育肥牛源大肠杆菌O26:H11分离株的毒力基因谱和克隆关系
Appl Environ Microbiol. 2016 Jun 13;82(13):3900-3912. doi: 10.1128/AEM.00498-16. Print 2016 Jul 1.
5
Genetic characterization of Shiga toxin-producing Escherichia coli O26:H11 strains isolated from animal, food, and clinical samples.从动物、食品和临床样本中分离出的产志贺毒素大肠杆菌O26:H11菌株的基因特征分析。
Front Cell Infect Microbiol. 2015 Oct 20;5:74. doi: 10.3389/fcimb.2015.00074. eCollection 2015.
6
The Mobilome; A Major Contributor to -Positive O26:H11 Strains Intra-Serotype Diversity.移动基因组；血清型内O26:H11阳性菌株多样性的主要贡献者
Front Microbiol. 2017 Sep 6;8:1625. doi: 10.3389/fmicb.2017.01625. eCollection 2017.
7
Molecular characterization of O157:H7, O26:H11 and O103:H2 Shiga toxin-producing Escherichia coli isolated from dairy products.从乳制品中分离出的产志贺毒素大肠杆菌O157:H7、O26:H11和O103:H2的分子特征
Int J Food Microbiol. 2017 Jul 17;253:59-65. doi: 10.1016/j.ijfoodmicro.2017.04.010. Epub 2017 Apr 21.
8
Pathogenicity islands in Shiga toxin-producing Escherichia coli O26, O103, and O111 isolates from humans and animals.来自人和动物的产志贺毒素大肠杆菌O26、O103和O111分离株中的致病岛
Foodborne Pathog Dis. 2014 May;11(5):342-5. doi: 10.1089/fpd.2013.1696. Epub 2014 Apr 2.
9
Identification of human-pathogenic strains of Shiga toxin-producing Escherichia coli from food by a combination of serotyping and molecular typing of Shiga toxin genes.通过志贺毒素基因的血清分型和分子分型相结合的方法从食品中鉴定产志贺毒素大肠杆菌的人类致病菌株。
Appl Environ Microbiol. 2007 Aug;73(15):4769-75. doi: 10.1128/AEM.00873-07. Epub 2007 Jun 8.
10
Persistence and reduction of Shiga toxin-producing Escherichia coli serotype O26:H11 in different types of raw fermented sausages.不同类型生发酵香肠中产志贺毒素大肠杆菌 O26:H11 的持续存在和减少。
Int J Food Microbiol. 2017 Nov 16;261:82-88. doi: 10.1016/j.ijfoodmicro.2017.09.019. Epub 2017 Sep 28.
引用本文的文献
1
Taxonomic Evaluation of the (Basonym ) Group ( , , ) Based on Whole Genome Sequences.基于全基因组序列对（基原异名）类群（，，）的分类学评估。
Microorganisms. 2021 Jan 26;9(2):246. doi: 10.3390/microorganisms9020246.
本文引用的文献
1
contamination of ready-to-eat foods and the risk for human health in the EU.欧盟即食食品的污染及对人类健康的风险。
EFSA J. 2018 Jan 24;16(1):e05134. doi: 10.2903/j.efsa.2018.5134. eCollection 2018 Jan.
2
The European Union One Health 2018 Zoonoses Report.《2018年欧盟“同一健康”人畜共患病报告》
EFSA J. 2019 Dec 11;17(12):e05926. doi: 10.2903/j.efsa.2019.5926. eCollection 2019 Dec.
3
Complete Genome Sequence of Tetracycline-Resistant Serratia liquefaciens S1, Isolated from Mixed Greens, Obtained Using Illumina MiSeq and Oxford Nanopore MinION Sequencing.从混合蔬菜中分离得到的耐四环素液化沙雷氏菌S1的全基因组序列，采用Illumina MiSeq和Oxford Nanopore MinION测序技术获得
Microbiol Resour Announc. 2020 May 7;9(19):e00156-20. doi: 10.1128/MRA.00156-20.
4
LiSEQ - whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.LiSEQ- 食源性李斯特菌在欧洲即食食品和人类临床病例中的横断面研究的全基因组测序。
Microb Genom. 2019 Feb;5(2). doi: 10.1099/mgen.0.000257. Epub 2019 Feb 18.
5
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
6
Presence of Human Pathogens in Produce from Retail Markets in Northern Germany.德国北部零售市场农产品中人类病原体的存在情况。
Foodborne Pathog Dis. 2017 Sep;14(9):502-509. doi: 10.1089/fpd.2016.2258. Epub 2017 Jun 8.
7
Development of a Web Tool for Escherichia coli Subtyping Based on Alleles.基于等位基因的大肠杆菌亚型分型网络工具的开发
J Clin Microbiol. 2017 Aug;55(8):2538-2543. doi: 10.1128/JCM.00737-17. Epub 2017 Jun 7.
8
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
9
Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data.利用全基因组测序数据对大肠杆菌分离株进行快速简便的电子血清分型
J Clin Microbiol. 2015 Aug;53(8):2410-26. doi: 10.1128/JCM.00008-15. Epub 2015 May 13.
10
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli.用于产志贺毒素大肠杆菌常规分型、监测和疫情检测的实时全基因组测序
J Clin Microbiol. 2014 May;52(5):1501-10. doi: 10.1128/JCM.03617-13. Epub 2014 Feb 26.
Zotero 插件