Chen Haitao, Luo Jun, Guo Jianchun
Department of Orthopedic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China (mainland).
Department of Pathology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China (mainland).
Med Sci Monit. 2020 Dec 4;26:e927392. doi: 10.12659/MSM.927392.
BACKGROUND We constructed a predictive risk model of esophageal carcinoma (EC) for prognostic prediction. MATERIAL AND METHODS Immune genes and the expression data were downloaded from the ImmPort database and The Cancer Genome Atlas database. Univariate analysis, Lasso regression, and multivariate analysis were applied to screen the ultimately included prognostic immune genes for the model based on the training cohort. Survival analysis and receiver operating characteristic (ROC) curve were applied to evaluate the model. The model was further validated in the testing and entire cohorts, and the clinical utility of the model and its ability to assess the subtypes of EC were evaluated in the entire cohort. RESULTS We detected 297 differentially expressed immune genes, including 241 upregulated genes and 56 downregulated genes in EC patients. Based on these genes, we developed a 7-immune gene model of EC, including HSPA6, S100A12, NOS2, DKK1, OSM, AR, and OXTR. The area under the curve (AUC) of the model at 1 year was 0.825. Similarly, the AUC values for the validating cohorts were 0.813 and 0.816, respectively. Pathological stage and risk score of the model were independent prognostic factors. This model was effective for both subtypes of EC. CONCLUSIONS We constructed a 7-gene model consisting of HSPA6, S100A12, NOS2, DKK1, OSM, AR, and OXTR. This risk model could be used for prognostic prediction of EC.
我们构建了一个用于食管癌(EC)预后预测的风险模型。
从ImmPort数据库和癌症基因组图谱(The Cancer Genome Atlas)数据库下载免疫基因及表达数据。基于训练队列,应用单因素分析、Lasso回归和多因素分析来筛选最终纳入模型的预后免疫基因。应用生存分析和受试者工作特征(ROC)曲线来评估该模型。在测试队列和整个队列中进一步验证该模型,并在整个队列中评估该模型的临床实用性及其评估EC亚型的能力。
我们在EC患者中检测到297个差异表达的免疫基因,包括241个上调基因和56个下调基因。基于这些基因,我们构建了一个EC的7免疫基因模型,包括热休克蛋白家族A(Hsp70)成员6(HSPA6)、钙结合蛋白S100A12(S100A12)、一氧化氮合酶2(NOS2)、 Dickkopf相关蛋白1(DKK1)、抑瘤素M(OSM)、雄激素受体(AR)和催产素受体(OXTR)。该模型1年时的曲线下面积(AUC)为0.825。同样,验证队列的AUC值分别为0.813和0.816。模型的病理分期和风险评分是独立的预后因素。该模型对EC的两种亚型均有效。
我们构建了一个由HSPA6、S100A12、NOS2、DKK1、OSM、AR和OXTR组成的7基因模型。该风险模型可用于EC的预后预测。