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sp. nov.,分离自中国北方水生环境。

sp. nov., isolated from aquatic environments in the northern PR China.

机构信息

The Second Clinic Medical College, Guangzhou University of Chinese Medicine, Guangzhou 510006, PR China.

Guangzhou KingMed Center for Clinical Laboratory, Guangzhou 510330, PR China.

出版信息

Int J Syst Evol Microbiol. 2021 Jan;71(1). doi: 10.1099/ijsem.0.004592. Epub 2020 Dec 7.

Abstract

Four strains (km711, km714, km542 and km524), representing a novel species, were isolated from aquatic environments in northern PR China. Cells were Gram-stain-negative, rod-shaped, microaerobic, motile and growth depended on l-cysteine. They grew at 25‒42 °C (optimum, 35‒37 °C) and could tolerate up to 1.5 % (w/v) NaCl (optimum, 0.5 %). The major fatty acids (>5 %) of the type strain km711 were C anteiso, C anteiso, iso-C and C 7 and/or iso-C 2OH. The pairwise comparison values were <96.1 % for 16S rRNA gene sequences, 23.3‒28.7 % interspecies variation for gene sequences, <93.6 % average nucleotide identity and <72.8 % average amino acid identity between these four strains and related type strains within the genus . The phylogenetic tree based on the four concatenated genes (16S rRNA, , and ) and protein-concatamer tree based on concatenation of 21 protein markers both revealed that these four strains formed a separate phylogenetic branch cluster within the genus . The results of phenotypic and genotypic features suggest that these four strains represent a novel species of the genus , for which the name sp. nov. is proposed (type strain km711=KCTC 15655=NBRC 113219).

摘要

从中国北方的水生环境中分离出四株(km711、km714、km542 和 km524)代表了一个新的种。细胞革兰氏阴性,杆状,微需氧,运动,生长依赖于 L-半胱氨酸。它们在 25-42°C(最佳,35-37°C)下生长,可以耐受高达 1.5%(w/v)NaCl(最佳,0.5%)。模式株 km711 的主要脂肪酸(>5%)为 C anteiso、C anteiso、iso-C 和 C 7 和/或 iso-C 2OH。16S rRNA 基因序列的成对比较值<96.1%,基因序列的种间变异值为 23.3-28.7%,与属内相关模式株的平均核苷酸同一性<93.6%,平均氨基酸同一性<72.8%。基于四个串联基因(16S rRNA、、和)的系统发育树和基于 21 个蛋白标记物串联的蛋白串联树都表明,这四株菌在属内形成了一个单独的系统发育分支群。表型和基因型特征的结果表明,这四株菌代表了属内的一个新种,建议将其命名为 sp. nov.(模式株 km711=KCTC 15655=NBRC 113219)。

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