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新种,一种从黄海潮间带沙滩中分离得到的海洋细菌。

sp. nov., a marine bacterium isolated from intertidal sand of the Yellow Sea.

机构信息

Department of Pathogenic Biology, Jining Medical University, Jining 272067, Shandong, PR China.

Shandong Province Key Laboratory of Applied Mycology, School of Life Sciences, Qingdao Agricultural University, Qingdao 266109, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 May;70(5):3497-3503. doi: 10.1099/ijsem.0.004206.

Abstract

A novel rod-shaped and Gram-stain-negative bacterium, designated strain RZ05, was isolated from a sand sample collected from the intertidal zone of the Yellow Sea, PR China. Results of phylogenetic analysis based on 16S rRNA gene sequences revealed that strain RZ05 clusters within the genus , a member of the family , and has the highest sequence similarity to KCTC 22021 (97.8 %), followed by KCTC 52191 (97.2 %). Cells of this strain were observed to be aerobic, oxidase- and catalase-positive, motile by gliding and formed yellow colonies. Growth occurred at 7-40 °C (optimum, 30 °C), at pH 6.5-9.5 (optimum, pH 7.0) and with 0.5-6 % (optimum, 2 %) NaCl. Its polar lipid profile included phosphatidylethanolamine, two unidentified glycolipids, one unidentified aminolipid and four unidentified lipids. The major cellular fatty acids were iso-C, iso-C G, iso-C 3-OH, iso-C 3-OH, iso-C 3-OH, summed feature 9 (10-methyl C/iso-C ω9) and summed feature 3 (iso-C 2-OH/C ω7/C ω6). The only respiratory quinone was menaquinone 6 (MK-6). The genome of strain RZ05 was 4.65 Mbp with a G+C content of 38.9 mol%. The average nucleotide identity and DNA-DNA hybridization values between strain RZ05 and its most closely related type strain KCTC 22021 were 80.3 and 26.3  %, respectively. The results of phylogenetic, phenotypic and chemotaxonomic analyses indicated that strain RZ05 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is RZ05 (=KCTC 62834=MCCC 1K03617).

摘要

一株新型杆状革兰氏阴性菌,被命名为 RZ05 菌株,从中国黄海潮间带的沙样中分离得到。基于 16S rRNA 基因序列的系统发育分析结果表明,菌株 RZ05 聚类在属内,属于黄杆菌科的一个成员,与 KCTC 22021(97.8%)的序列相似度最高,其次是 KCTC 52191(97.2%)。该菌株的细胞为需氧、氧化酶和过氧化氢酶阳性,通过滑行运动,形成黄色菌落。该菌株在 7-40°C(最佳温度为 30°C)、pH6.5-9.5(最佳 pH 值为 7.0)和 0.5-6%(最佳为 2%)NaCl 的条件下生长。其极性脂谱包括磷脂酰乙醇胺、两种未鉴定的糖脂、一种未鉴定的胺脂和四种未鉴定的脂类。主要的细胞脂肪酸为 iso-C、iso-C G、iso-C 3-OH、iso-C 3-OH、iso-C 3-OH、summed feature 9(10-methyl C/iso-C ω9)和 summed feature 3(iso-C 2-OH/C ω7/C ω6)。唯一的呼吸醌是menaquinone 6(MK-6)。菌株 RZ05 的基因组为 4.65 Mbp,G+C 含量为 38.9 mol%。菌株 RZ05 与其最密切相关的模式菌株 KCTC 22021 的平均核苷酸同一性和 DNA-DNA 杂交值分别为 80.3%和 26.3%。系统发育、表型和化学分类学分析结果表明,菌株 RZ05 代表了属的一个新型种,建议将其命名为 sp. nov.。其模式菌株为 RZ05(=KCTC 62834=MCCC 1K03617)。

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