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分类算法在漫反射光谱测量中的应用,用于生物组织的离体表征

Application of Classification Algorithms to Diffuse Reflectance Spectroscopy Measurements for Ex Vivo Characterization of Biological Tissues.

作者信息

Fanjul-Vélez Félix, Pampín-Suárez Sandra, Arce-Diego José Luis

机构信息

Biomedical Engineering Group, TEISA Department, University of Cantabria, Av de los Castros s/n, 39005 Santander, Spain.

出版信息

Entropy (Basel). 2020 Jul 3;22(7):736. doi: 10.3390/e22070736.

Abstract

Biological tissue identification in real clinical scenarios is a relevant and unsolved medical problem, particularly in the operating room. Although it could be thought that healthy tissue identification is an immediate task, in practice there are several clinical situations that greatly impede this process. For instance, it could be challenging in open surgery in complex areas, such as the neck, where different structures are quite close together, with bleeding and other artifacts affecting visual inspection. Solving this issue requires, on one hand, a high contrast noninvasive technique and, on the other hand, powerful classification algorithms. Regarding the technique, optical diffuse reflectance spectroscopy has demonstrated such capabilities in the discrimination of tumoral and healthy biological tissues. The complex signals obtained, in the form of spectra, need to be adequately computed in order to extract relevant information for discrimination. As usual, accurate discrimination relies on massive measurements, some of which serve as training sets for the classification algorithms. In this work, diffuse reflectance spectroscopy is proposed, implemented, and tested as a potential technique for healthy tissue discrimination. A specific setup is built and spectral measurements on several ex vivo porcine tissues are obtained. The massive data obtained are then analyzed for classification purposes. First of all, considerations about normalization, detrending and noise are taken into account. Dimensionality reduction and tendencies extraction are also considered. Featured spectral characteristics, principal component or linear discrimination analysis are applied, as long as classification approaches based on k-nearest neighbors (k-NN), quadratic discrimination analysis (QDA) or Naïve Bayes (NB). Relevant parameters about classification accuracy are obtained and compared, including ANOVA tests. The results show promising values of specificity and sensitivity of the technique for some classification algorithms, even over 95%, which could be relevant for clinical applications in the operating room.

摘要

在实际临床场景中进行生物组织识别是一个相关且尚未解决的医学问题,尤其是在手术室中。尽管可能认为健康组织识别是一项直接的任务,但实际上有几种临床情况极大地阻碍了这一过程。例如,在复杂区域的开放手术中,如颈部,不同结构靠得很近,出血和其他伪像会影响视觉检查,这可能具有挑战性。解决这个问题一方面需要高对比度的非侵入性技术,另一方面需要强大的分类算法。关于技术方面,光学漫反射光谱已在区分肿瘤和健康生物组织方面展现出这样的能力。以光谱形式获得的复杂信号需要进行适当计算,以便提取用于区分的相关信息。通常,准确的区分依赖于大量测量,其中一些用作分类算法的训练集。在这项工作中,提出、实施并测试了漫反射光谱作为一种潜在的健康组织区分技术。构建了一个特定的装置,并对几种离体猪组织进行了光谱测量。然后对获得的大量数据进行分析以用于分类目的。首先,考虑了归一化、去趋势和噪声等因素。还考虑了降维和趋势提取。应用了特征光谱特征、主成分或线性判别分析,以及基于k近邻(k-NN)、二次判别分析(QDA)或朴素贝叶斯(NB)的分类方法。获得并比较了关于分类准确性的相关参数,包括方差分析测试。结果表明,对于某些分类算法,该技术的特异性和敏感性有很可观的值,甚至超过95%,这对于手术室中的临床应用可能具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa75/7517275/57b0616b9537/entropy-22-00736-g001.jpg

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