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无水生活蠓成虫和幼虫阶段的微生物群组成数据。

Microbiota composition data of imago and larval stage of the anhydrobiotic midge.

作者信息

Shaikhutdinov Nurislam, Gogoleva Natalia, Gusev Oleg, Shagimardanova Elena

机构信息

Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.

Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Kazan, Russia.

出版信息

Data Brief. 2020 Nov 18;33:106527. doi: 10.1016/j.dib.2020.106527. eCollection 2020 Dec.

Abstract

The ability of larvae of a non-biting midge (Chironomidae) to withstand complete desiccation is a remarkable natural example of adaptation to extreme environment. In anhydrobiosis the larvae lose up to 99.2% of water and stay in a dry form until rainfall in natural environment or up to several decades in laboratory maintaining ability to restore activity soon after rehydration [1]. In the desiccated state, the larvae tolerate a variety of abiotic stresses, including high radiation exposure (7000Gry of Co gamma rays) [2]. Such a cross-resistance to desiccation and ionizing radiation is a characteristic of many anhydrobiotic organisms and believed to be based on similar molecular mechanisms. Microorganisms associated with the anhydrobiotic midge can also sustain desiccation and thus be radiation-resistant because desiccation-resistant prokaryotes are shown to be cross-resistant to ionizing radiation [3]. Microorganisms inhabiting larvae of the anhydrobiotic midge can also sustain desiccation and probably can sustain high doses of ionizing radiation. Therefore, it would be of interest to analyze the taxonomic and functional composition of microbiome of the anhydrobiotic midge. Sequencing data for the total DNA of anhydrobiotic organisms, which also contain reads derived from symbiotic microorganisms provide a promising opportunity to identify microorganisms with remarkable adaptation. It is known that at least some protective genes, such as late embryogenesis abundant (LEA) genes appeared in the genome of the midge by probable horizontal gene transfer from bacteria [1]. We performed shotgun sequencing of imago and larvae DNA samples using HiSeq 2000 and Genome Analyzer IIX System platforms. To assess microbiome diversity specific to anhydrobiotic midges, we analyzed Pool-seq data of the natural population of imago and Pool-seq data of final instar larvae. Data has been deposited in NCBI BioProject repository at NCBI under the accession number PRJNA659554 and consists of raw sequence data.

摘要

一种非吸血蠓(摇蚊科)幼虫耐受完全脱水的能力是适应极端环境的一个显著自然实例。在隐生状态下,幼虫失去高达99.2%的水分,并以干燥形式留存,直到自然环境中有降雨,或者在实验室中留存长达数十年,在重新水化后很快恢复活动的能力[1]。在脱水状态下,幼虫能耐受多种非生物胁迫,包括高剂量辐射暴露(7000戈瑞的钴γ射线)[2]。这种对脱水和电离辐射的交叉抗性是许多隐生生物的特征,并且被认为基于相似的分子机制。与这种隐生蠓相关的微生物也能耐受脱水,因此具有抗辐射能力,因为抗脱水的原核生物已被证明对电离辐射具有交叉抗性[3]。栖息在这种隐生蠓幼虫体内的微生物也能耐受脱水,并且可能能耐受高剂量的电离辐射。因此,分析这种隐生蠓微生物组的分类和功能组成将是很有意义的。隐生生物总DNA的测序数据,其中也包含源自共生微生物的读数,为鉴定具有显著适应性的微生物提供了一个有前景的机会。已知至少一些保护基因,如晚期胚胎发生丰富(LEA)基因,可能是通过从细菌的水平基因转移出现在蠓的基因组中[1]。我们使用HiSeq 2000和Genome Analyzer IIX系统平台对成虫和幼虫的DNA样本进行了鸟枪法测序。为了评估这种隐生蠓特有的微生物组多样性,我们分析了成虫自然种群的Pool-seq数据和末龄幼虫的Pool-seq数据。数据已存入NCBI的NCBI BioProject数据库,登录号为PRJNA659554,由原始序列数据组成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b49/7689402/f94d23651b7a/gr1.jpg

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