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DNA 聚合酶和 Cas9 作为 DNA 修饰酶类的代表在 DNA 传感器设计中的应用(综述)。

The application of DNA polymerases and Cas9 as representative of DNA-modifying enzymes group in DNA sensor design (review).

机构信息

Laboratory of Nanotechnology, Department of Functional Materials and Electronics, Center for Physical Sciences and Technology, Sauletekio av. 3, Vilnius, Lithuania; Department of Physical Chemistry, Faculty of Chemistry and Geoscience, Vilnius University, Naugarduko str. 24, LT-03225, Vilnius, Lithuania.

Department of Physical Chemistry, Faculty of Chemistry and Geoscience, Vilnius University, Naugarduko str. 24, LT-03225, Vilnius, Lithuania.

出版信息

Biosens Bioelectron. 2021 Mar 1;175:112867. doi: 10.1016/j.bios.2020.112867. Epub 2020 Dec 3.

Abstract

Rapid detection of nucleic acids (DNA or RNA) by inexpensive, selective, accurate, and highly sensitive methods is very important for biosensors. DNA-sensors based on DNA-modifying enzymes for fast determination and monitoring of pathogenic (Zika, Dengue, SARS-Cov-2 (inducer of COVID-19), human papillomavirus, HIV, etc.) viruses and diagnosis of virus-induced diseases is a key factor of this overview. Recently, DNA-modifying enzymes (Taq DNA polymerase, Phi29 DNA polymerase) have been widely used for the diagnosis of virus or pathogenic disease by gold standard (PCR, qPCR, RT-qPCR) methods, therefore, alternative methods have been reviewed. The main mechanisms of DNA metabolism (replication cycle, amplification) and the genomeediting tool CRISPR-Cas9 are purposefully discussed in order to address strategic possibility to design DNA-sensors based on immobilized DNA-enzymes. However, the immobilization of biologically active proteins on a gold carrier technique with the ability to detect viral or bacterial nucleic acids is individual for each DNA-modifying enzyme group, due to a different number of active sites, C and N terminal locations and arrangement, therefore, individual protocols based on the 'masking' of active sites should be elaborated for each enzyme.

摘要

快速检测核酸(DNA 或 RNA)的廉价、选择性、准确和高灵敏度方法对于生物传感器非常重要。基于 DNA 修饰酶的 DNA 传感器可快速测定和监测病原体(寨卡病毒、登革热病毒、SARS-CoV-2(引发 COVID-19)、人乳头瘤病毒、HIV 等)病毒并诊断由病毒引起的疾病,这是该综述的关键因素。最近,DNA 修饰酶(Taq DNA 聚合酶、Phi29 DNA 聚合酶)已被广泛用于通过金标准(PCR、qPCR、RT-qPCR)方法诊断病毒或致病性疾病,因此,本文回顾了替代方法。为了探讨基于固定化 DNA-酶设计 DNA 传感器的战略可能性,有针对性地讨论了 DNA 代谢(复制周期、扩增)的主要机制和基因组编辑工具 CRISPR-Cas9。然而,由于活性位点数量、C 和 N 末端位置和排列的不同,具有检测病毒或细菌核酸能力的金载体技术上生物活性蛋白的固定化对于每种 DNA 修饰酶组都是独特的,因此,应该针对每种酶制定基于“掩蔽”活性位点的个别方案。

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