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葡萄(Vitis vinifera)DHN2 和 DHN4 脱水素同工型的功能特征:一种基于计算机和体外的方法。

Functional characterization of VviDHN2 and VviDHN4 dehydrin isoforms from Vitis vinifera (L.): An in silico and in vitro approach.

机构信息

Grupo Biotecnología y Calidad Posrecolección, Departamento de Caracterización, Calidad y Seguridad, Instituto de Ciencia y Tecnología de Alimentos y Nutrición, ICTAN-CSIC, José Antonio Novais 10, Ciudad Universitaria, E-28040, Madrid, Spain.

Grupo Biotecnología y Calidad Posrecolección, Departamento de Caracterización, Calidad y Seguridad, Instituto de Ciencia y Tecnología de Alimentos y Nutrición, ICTAN-CSIC, José Antonio Novais 10, Ciudad Universitaria, E-28040, Madrid, Spain.

出版信息

Plant Physiol Biochem. 2021 Jan;158:146-157. doi: 10.1016/j.plaphy.2020.12.003. Epub 2020 Dec 4.

Abstract

Dehydrins, a family of hydrophilic and intrinsically disordered proteins, are a subgroup of late embryogenesis abundant proteins that perform different protective roles in plants. Although the transition from a disordered to an ordered state has been associated with dehydrin function or interactions with specific partner molecules, the question of how the primary and secondary dehydrin protein structure is related to specific functions or target molecule preferences remains unresolved. This work addresses the in silico sequencing analysis and in vitro functional characterization of two dehydrin isoforms, VviDHN2 and VviDHN4, from Vitis vinifera. Conformational changes suggest potential interactions with a broad range of molecules and could point to more than one function. The in silico analysis showed differences in conserved segments, specific amino acid binding sequences, heterogeneity of structural properties and predicted sites accessible for various post-translational modifications between the sequence of both dehydrins. Moreover, in vitro functional analysis revealed that although they both showed slight antifungal activity, only VviDHN4 acts as a molecular shield that protects proteins from freezing and dehydration. VviDHN4 also demonstrated high potential as a chaperone and reactive oxygen species scavenger, in addition to presenting antifreeze activity, all of which confirms its multifunctional nature. Our findings highlight the significant role of Y-segments and the differential and specific amino acid composition of less conserved segments that are rich in polar/charged residues between S- and K-segments, coupled with post-translational modifications, in modulating and switching dehydrin biological function.

摘要

脱水素是一类亲水性和无规卷曲的蛋白质,是晚期胚胎丰富蛋白的一个亚群,在植物中发挥不同的保护作用。尽管从无序状态向有序状态的转变与脱水素的功能或与特定的伴侣分子的相互作用有关,但主要和次要脱水素蛋白结构与特定功能或靶分子偏好之间的关系问题仍未解决。本工作对来自葡萄的两种脱水素同工型 VviDHN2 和 VviDHN4 进行了计算机测序分析和体外功能表征。构象变化表明可能与广泛的分子发生相互作用,并可能指向不止一种功能。计算机分析显示在两个脱水素的序列之间存在保守片段、特定氨基酸结合序列、结构特性异质性和预测的各种翻译后修饰的可及性位点的差异。此外,体外功能分析表明,尽管它们都表现出轻微的抗真菌活性,但只有 VviDHN4 作为分子盾牌,保护蛋白质免受冷冻和脱水的影响。VviDHN4 还表现出作为分子伴侣和活性氧清除剂的高潜力,除了具有抗冻活性外,所有这些都证实了它的多功能性。我们的研究结果强调了 Y 片段的重要作用,以及在 S 和 K 片段之间的差异和特定的氨基酸组成,富含极性/带电残基,加上翻译后修饰,在调节和切换脱水素的生物学功能方面的作用。

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