Departamento de Cristalografía y Biología Estructural, Instituto de Química-Física "Rocasolano" (IQFR-CSIC), Madrid, 28006, Spain.
Inflammation and Macrophage Plasticity lab, CIC bioGUNE-BRTA (Basque Research and Technology Alliance), Derio, 48160, Spain.
Microb Biotechnol. 2022 Feb;15(2):648-667. doi: 10.1111/1751-7915.13732. Epub 2020 Dec 18.
Colorectal cancer pathogenesis and progression is associated with the presence of Fusobacterium nucleatum and the reduction of acetylated derivatives of spermidine, as well as dietary components such as tannin-rich foods. We show that a new tannase orthologue of F. nucleatum (TanBF ) has significant structural differences with its Lactobacillus plantarum counterpart affecting the flap covering the active site and the accessibility of substrates. Crystallographic and molecular dynamics analysis revealed binding of polyamines to a small cavity that connects the active site with the bulk solvent which interact with catalytically indispensable residues. As a result, spermidine and its derivatives, particularly N -acetylated spermidine, inhibit the hydrolytic activity of TanBF and increase the toxicity of gallotannins to F. nucleatum. Our results support a model in which the balance between the detoxicant activity of TanBF and the presence of metabolic inhibitors can dictate either conducive or unfavourable conditions for the survival of F. nucleatum.
结直肠癌的发病机制和进展与具核梭杆菌的存在以及亚精胺的乙酰化衍生物的减少有关,以及单宁酸丰富的食物等饮食成分有关。我们表明,具核梭杆菌的一种新的单宁酶同源物(TanBF)与它的植物乳杆菌对应物具有显著的结构差异,影响覆盖活性位点的瓣和底物的可及性。晶体学和分子动力学分析表明,多胺结合到一个小腔中,该小腔将活性位点与主体溶剂连接,与催化必不可少的残基相互作用。结果,亚精胺及其衍生物,特别是 N-乙酰化亚精胺,抑制 TanBF 的水解活性,并增加没食子单宁对具核梭杆菌的毒性。我们的结果支持这样一种模型,即 TanBF 的解毒活性与代谢抑制剂的存在之间的平衡可以决定具核梭杆菌生存的有利或不利条件。