Suppr超能文献

十年膜蛋白结构生物学的元分析:去污剂、膜模拟物和结构测定技术。

A 10-year meta-analysis of membrane protein structural biology: Detergents, membrane mimetics, and structure determination techniques.

机构信息

Department of Physiology and Cellular Biophysics, Columbia University, NY, NY, USA.

Department of Physiology and Cellular Biophysics, Columbia University, NY, NY, USA.

出版信息

Biochim Biophys Acta Biomembr. 2021 Mar 1;1863(3):183533. doi: 10.1016/j.bbamem.2020.183533. Epub 2020 Dec 17.

Abstract

Structure determination of membrane proteins is critical to the molecular understanding of many life processes, yet it has historically been a technically challenging endeavor. This past decade has given rise to a number of technological advancements, techniques, and reagents, which have facilitated membrane protein structural biology, resulting in an ever-growing number of membrane protein structures determined. To collate these advances, we have mined available literature to analyze the purification and structure determination specifics for all uniquely solved membrane protein structures from 2010 to 2019. Our analyses demonstrate the strong impact of single-particle cryo-electron microscopy on the field and illustrate how this technique has affected detergent and membrane mimetic usage. Furthermore, we detail how different structure determination methods, taxonomic domains and protein classes have unique detergent/membrane mimetic profiles, highlighting the importance of tailoring their selection. Our analyses provide a quantitative overview of where the field of membrane protein structural biology stands and how it has developed over time. We anticipate that these will serve as a useful tool to streamline future membrane protein structure determination by guiding the choice of detergent/membrane mimetic.

摘要

膜蛋白结构的确定对于许多生命过程的分子理解至关重要,但在历史上,这一直是一项具有技术挑战性的工作。过去十年中出现了许多技术进步、技术和试剂,这些进步促进了膜蛋白结构生物学的发展,导致越来越多的膜蛋白结构得以确定。为了整理这些进展,我们挖掘了可用的文献,分析了 2010 年至 2019 年所有独特解决的膜蛋白结构的纯化和结构确定细节。我们的分析表明,单颗粒冷冻电子显微镜对该领域具有强大的影响,并说明了该技术如何影响去污剂和膜模拟物的使用。此外,我们详细介绍了不同的结构测定方法、分类单元和蛋白质类如何具有独特的去污剂/膜模拟物特征,突出了定制选择的重要性。我们的分析提供了膜蛋白结构生物学领域现状的定量概述,以及随着时间的推移它是如何发展的。我们预计,这些分析将通过指导去污剂/膜模拟物的选择,成为简化未来膜蛋白结构测定的有用工具。

相似文献

2
Detergents and alternatives in cryo-EM studies of membrane proteins.去污剂和替代物在膜蛋白冷冻电镜研究中的应用。
Acta Biochim Biophys Sin (Shanghai). 2022 Aug 25;54(8):1049-1056. doi: 10.3724/abbs.2022088.
3
Interfacing Membrane Mimetics with Mass Spectrometry.界面膜模拟与质谱联用。
Acc Chem Res. 2016 Nov 15;49(11):2459-2467. doi: 10.1021/acs.accounts.6b00379. Epub 2016 Oct 13.
7
Use of detergents in two-dimensional crystallization of membrane proteins.洗涤剂在膜蛋白二维结晶中的应用。
Biochim Biophys Acta. 2000 Nov 23;1508(1-2):112-28. doi: 10.1016/s0005-2736(00)00307-2.

引用本文的文献

5
MFSD2A in Focus: the Molecular Mechanism of Omega-3 Fatty Acid Transport.聚焦MFSD2A:ω-3脂肪酸转运的分子机制
Physiology (Bethesda). 2025 Sep 1;40(5):0. doi: 10.1152/physiol.00068.2024. Epub 2025 Mar 24.

本文引用的文献

1
Cryo-EM analysis of a membrane protein embedded in the liposome.冷冻电镜分析嵌入脂质体中的膜蛋白。
Proc Natl Acad Sci U S A. 2020 Aug 4;117(31):18497-18503. doi: 10.1073/pnas.2009385117. Epub 2020 Jul 17.
2
Cryo-electron microscopy analysis of small membrane proteins.冷冻电镜分析小膜蛋白。
Curr Opin Struct Biol. 2020 Oct;64:26-33. doi: 10.1016/j.sbi.2020.05.009. Epub 2020 Jun 27.
4
Structural insights into the gating mechanisms of TRPV channels.TRPV 通道门控机制的结构见解。
Cell Calcium. 2020 May;87:102168. doi: 10.1016/j.ceca.2020.102168. Epub 2020 Jan 24.
5
8
Recent innovations in membrane-protein structural biology.膜蛋白结构生物学的最新创新成果。
F1000Res. 2019 Feb 22;8. doi: 10.12688/f1000research.16234.1. eCollection 2019.
9
Challenges and opportunities in cryo-EM single-particle analysis.冷冻电镜单颗粒分析的挑战与机遇。
J Biol Chem. 2019 Mar 29;294(13):5181-5197. doi: 10.1074/jbc.REV118.005602. Epub 2019 Feb 25.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验