Tan Jun G, Omar Aznan, Lee Wendy By, Wong Moh S
Department of Laboratory Medicine, Khoo Teck Puat Hospital, Singapore.
Clin Biochem Rev. 2020 Dec;41(3):79-92. doi: 10.33176/AACB-20-00007.
Group testing, also known as pooled sample testing, was first proposed by Robert Dorfman in 1943. While sample pooling has been widely practiced in blood-banking, it is traditionally seen as anathema for clinical laboratories. However, the ongoing COVID-19 pandemic has re-ignited interest for group testing among clinical laboratories to mitigate supply shortages. We propose five criteria to assess the suitability of an analyte for pooled sample testing in general and outline a practical approach that a clinical laboratory may use to implement pooled testing for SARS-CoV-2 PCR testing. The five criteria we propose are: (1) the analyte concentrations in the diseased persons should be at least one order of magnitude (10 times) higher than in healthy persons; (2) sample dilution should not overly reduce clinical sensitivity; (3) the current prevalence must be sufficiently low for the number of samples pooled for the specific protocol; (4) there is no requirement for a fast turnaround time; and (5) there is an imperative need for resource rationing to maximise public health outcomes. The five key steps we suggest for a successful implementation are: (1) determination of when pooling takes place (pre-pre analytical, pre-analytical, analytical); (2) validation of the pooling protocol; (3) ensuring an adequate infrastructure and archival system; (4) configuration of the laboratory information system; and (5) staff training. While pool testing is not a panacea to overcome reagent shortage, it may allow broader access to testing but at the cost of reduction in sensitivity and increased turnaround time.
分组检测,也称为混合样本检测,最早由罗伯特·多尔夫曼于1943年提出。虽然样本混合在血库中已广泛应用,但传统上临床实验室认为这是不可接受的。然而,持续的新冠疫情重新点燃了临床实验室对分组检测的兴趣,以缓解供应短缺问题。我们提出了五条标准来评估一般情况下分析物是否适合混合样本检测,并概述了临床实验室可用于实施新冠病毒PCR检测分组检测的实用方法。我们提出的五条标准是:(1)患病者体内的分析物浓度应比健康人至少高一个数量级(10倍);(2)样本稀释不应过度降低临床敏感性;(3)对于特定方案所混合的样本数量,当前患病率必须足够低;(4)对快速周转时间没有要求;(5)迫切需要资源配给以最大化公共卫生成果。我们建议成功实施的五个关键步骤是:(1)确定何时进行混合(分析前、分析前、分析阶段);(2)验证混合方案;(3)确保有足够的基础设施和存档系统;(4)配置实验室信息系统;(5)员工培训。虽然分组检测并非克服试剂短缺的万灵药,但它可能使更多人能够进行检测,但代价是敏感性降低和周转时间增加。