Chan Kiat Hwa, Lim Jaehong, Jee Joo Eun, Aw Jia Hui, Lee Su Seong
Division of Science, Yale-NUS College, 16 College Avenue West, Singapore 138527, Singapore.
Institute of Bioengineering and Nanotechnology, 31 Biopolis Way, The Nanos, Singapore 138669, Singapore.
Int J Mol Sci. 2020 Dec 18;21(24):9671. doi: 10.3390/ijms21249671.
Diabetes-related neuropathy is a debilitating condition that may be averted if it can be detected early. One possible way this can be achieved at low cost is to utilise peptides to detect C-peptide, a biomarker of diabetic neuropathy. This depends on peptide-peptide co-assembly, which is currently in a nascent stage of intense study. Instead, we propose a bead-based triple-overlay combinatorial strategy that can preserve inter-residue information during the screening process for a suitable complementary peptide to co-assemble with C-peptide. The screening process commenced with a pentapeptide general library, which revealed histidine to be an essential residue. Further screening with seven tetrapeptide focused libraries led to a table of self-consistent peptide sequences that included tryptophan and lysine at high frequencies. Three complementary nonapeptides (9mer com-peptides), wpkkhfwgq (Trp-D), kwkkhfwgq (Lys-D), and KWKKHFWGQ (Lys-L) (as a negative control) were picked from this table for co-assembly studies with C-peptide. Attenuated total reflectance Fourier transform infrared (ATR-FTIR) and circular dichroism (CD) spectroscopies were utilized to study inter-peptide interactions and changes in secondary structures respectively. ATR-FTIR studies showed that there is indeed inter-peptide interaction between C-peptide and the tryptophan residues of the 9mer com-peptides. CD studies of unaggregated and colloidal C-peptide with the 9mer com-peptides suggest that the extent of co-assembly of C-peptide with Trp-D is greatest, followed by Lys-D and Lys-L. These results are promising and indicate that the presented strategy is viable for designing and evaluating longer complementary peptides, as well as complementary peptides for co-assembly with other polypeptides of interest and importance. We discuss the possibility of designing complementary peptides to inhibit toxic amyloidosis with this approach.
糖尿病相关神经病变是一种使人衰弱的病症,如果能早期检测到则有可能避免。以低成本实现这一目标的一种可能方法是利用肽来检测C肽,C肽是糖尿病神经病变的一种生物标志物。这依赖于肽 - 肽共组装,目前该领域正处于深入研究的初期阶段。相反,我们提出了一种基于珠子的三重叠加组合策略,该策略可以在筛选与C肽共组装的合适互补肽的过程中保留残基间信息。筛选过程从一个五肽通用文库开始,该文库显示组氨酸是必需残基。用七个四肽聚焦文库进一步筛选得到了一组自洽的肽序列表,其中色氨酸和赖氨酸出现频率较高。从该表中挑选了三种互补的九肽(9mer com - 肽),wpkkhfwgq(Trp - D)、kwkkhfwgq(Lys - D)和KWKKHFWGQ(Lys - L)(作为阴性对照)用于与C肽的共组装研究。利用衰减全反射傅里叶变换红外光谱(ATR - FTIR)和圆二色光谱(CD)分别研究肽间相互作用和二级结构变化。ATR - FTIR研究表明,C肽与9mer com - 肽的色氨酸残基之间确实存在肽间相互作用。对未聚集和胶体状态的C肽与9mer com - 肽进行的CD研究表明,C肽与Trp - D的共组装程度最大,其次是Lys - D和Lys - L。这些结果很有前景,表明所提出的策略对于设计和评估更长的互补肽以及与其他感兴趣和重要的多肽共组装的互补肽是可行的。我们讨论了用这种方法设计互补肽以抑制毒性淀粉样变性的可能性。