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(兰科)的完整叶绿体基因组。

The complete chloroplast genome of (Orchidaceae).

作者信息

Wang Meng, Chen Jian-Bing, Chen Gui-Zhen, Chen Li-Jun, Wu Xin-Yi, Huang Jie

机构信息

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, Shenzhen, China.

Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Centre of China and The Orchid Conservation and Research Centre of Shenzhen, Shenzhen, China.

出版信息

Mitochondrial DNA B Resour. 2019 Jul 16;4(2):2359-2360. doi: 10.1080/23802359.2019.1629844.

DOI:10.1080/23802359.2019.1629844
PMID:33365543
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7687489/
Abstract

Lindl. is an endangered species of Orchidaceae and distributed in Guangxi, Yunnan and Hainan of China, and India, Myanmar, Nepal, Vietnam. Here, we report the complete chloroplast (cp) genome sequence and the cp genome features of The complete chloroplast (cp) genome sequence of is 156,520 bp in length and presented a typical quadripartite structure including one large single-copy region (LSC, 85,518 bp), one small single-copy region (SSC, 20,014 bp), and two inverted repeat regions (IRs, 25,471 bp). The cp genome encoded 135 genes, of which 106 were unique genes (78 protein-coding genes, 24 tRNAs, and 4 rRNAs). The phylogenetic relationships show that is closely related to other species in the genus , and is sister with .

摘要

林氏兰是兰科的一种濒危物种,分布于中国的广西、云南和海南,以及印度、缅甸、尼泊尔、越南。在此,我们报道了林氏兰的完整叶绿体(cp)基因组序列及其cp基因组特征。林氏兰的完整叶绿体(cp)基因组序列长度为156,520 bp,呈现出典型的四分体结构,包括一个大单拷贝区域(LSC,85,518 bp)、一个小单拷贝区域(SSC,20,014 bp)和两个反向重复区域(IRs,25,471 bp)。该cp基因组编码135个基因,其中106个为独特基因(78个蛋白质编码基因、24个tRNA和4个rRNA)。系统发育关系表明,林氏兰与该属中的其他物种密切相关,并且与[物种名]是姐妹关系。 (注:原文中部分物种名未给出完整信息,用[物种名]代替)

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa0c/7687489/a3352e14c5ca/TMDN_A_1629844_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa0c/7687489/a3352e14c5ca/TMDN_A_1629844_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa0c/7687489/a3352e14c5ca/TMDN_A_1629844_F0001_B.jpg

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引用本文的文献

1
The complete chloroplast genome of an endangered species (Orchidaceae).一种濒危物种(兰科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2019 Sep 19;4(2):3068-3069. doi: 10.1080/23802359.2019.1666047.

本文引用的文献

1
The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family.兰科植物中叶绿体来源的ndh基因的定位与易位
Sci Rep. 2015 Mar 12;5:9040. doi: 10.1038/srep09040.
2
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
3
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.
CpGAVAS,一个整合的网络服务器,用于完全测序的叶绿体基因组序列的注释、可视化、分析和 GenBank 提交。
BMC Genomics. 2012 Dec 20;13:715. doi: 10.1186/1471-2164-13-715.
4
A rapid bootstrap algorithm for the RAxML Web servers.一种用于RAxML网络服务器的快速自引导算法。
Syst Biol. 2008 Oct;57(5):758-71. doi: 10.1080/10635150802429642.