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一种兰花物种(林德利氏兰花)的完整叶绿体基因组

Complete chloroplast genome of an orchid species Lindl.

作者信息

Zhang Guo-Qiang, Liu Zhong-Jian, Lan Si-Ren

机构信息

Forestry College of Fujian Agriculture and Forestry University, Fuzhou, China.

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen, Shenzhen, China.

出版信息

Mitochondrial DNA B Resour. 2019 Sep 6;4(2):2940-2941. doi: 10.1080/23802359.2019.1662743.

DOI:10.1080/23802359.2019.1662743
PMID:33365802
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7706694/
Abstract

Lindl. is an ornamental plant and its native range is south China to north Vietnam. Here, we report the complete chloroplast (cp) genome sequence and the cp genome features of , which was assembled and characterized based on Illumina pair-end sequencing data. The complete chloroplast genome was 153998 bp in length. Its structure contained a large single-copy (LSC) region of 84,725 bp and a small single-copy (SSC) region of 19,009 bp, which were separated by a pair of extremely inverted repeats (IRs) of 25,132 bp each. The phylogenetic analysis indicated that was in the basal of subgenus .

摘要

林德尔氏(Lindl.)是一种观赏植物,其原生范围是从中国南部到越南北部。在此,我们报告了基于Illumina双端测序数据组装和表征的林德尔氏(Lindl.)的完整叶绿体(cp)基因组序列及其cp基因组特征。完整的叶绿体基因组长度为153998 bp。其结构包含一个84725 bp的大单拷贝(LSC)区域和一个19009 bp的小单拷贝(SSC)区域,它们被一对各为25132 bp 的极端反向重复序列(IRs)隔开。系统发育分析表明,林德尔氏(Lindl.)处于亚属的基部。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca68/7706694/ed1041538a93/TMDN_A_1662743_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca68/7706694/ed1041538a93/TMDN_A_1662743_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca68/7706694/ed1041538a93/TMDN_A_1662743_F0001_B.jpg

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本文引用的文献

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Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
2
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
3
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.
CpGAVAS,一个整合的网络服务器,用于完全测序的叶绿体基因组序列的注释、可视化、分析和 GenBank 提交。
BMC Genomics. 2012 Dec 20;13:715. doi: 10.1186/1471-2164-13-715.
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A rapid bootstrap algorithm for the RAxML Web servers.一种用于RAxML网络服务器的快速自引导算法。
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