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中国极度濒危物种(松科)的完整叶绿体基因组。

The complete chloroplast genome of (Pinaceae), a critically endangered species in China.

作者信息

Ling Li-Zhen, Zhang Shu-Dong

机构信息

School of Biological Sciences and Technology, Liupanshui Normal University, Liupanshui, China.

出版信息

Mitochondrial DNA B Resour. 2019 Jul 22;4(2):2668-2669. doi: 10.1080/23802359.2019.1644224.

DOI:10.1080/23802359.2019.1644224
PMID:33365675
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7706991/
Abstract

The complete chloroplast (cp) genome of , a critically endangered species in China, was reported in this study. The cp genome is 118,300 bp in length and has four regions: 65,298 bp of large single copy (LSC) region and 52,098 bp of small single copy (SSC) region separated by 452 bp of highly reduced inverted repeat (IR) regions. This cp genome with GC content of 38.8% contains 107 unique genes (73 protein-coding genes, 30 tRNA genes, and four rRNA genes). Phylogenetic analysis based on the complete cp genomes indicates that is closer to than .

摘要

本研究报道了中国一种极度濒危物种的完整叶绿体(cp)基因组。该cp基因组长度为118,300 bp,有四个区域:65,298 bp的大单拷贝(LSC)区域和52,098 bp的小单拷贝(SSC)区域,由452 bp高度简化的反向重复(IR)区域隔开。这个GC含量为38.8%的cp基因组包含107个独特基因(73个蛋白质编码基因、30个tRNA基因和4个rRNA基因)。基于完整cp基因组的系统发育分析表明, 比 更接近 。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4427/7706991/8a2353859b40/TMDN_A_1644224_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4427/7706991/8a2353859b40/TMDN_A_1644224_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4427/7706991/8a2353859b40/TMDN_A_1644224_F0001_B.jpg

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本文引用的文献

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Characterization of the complete chloroplast genome of (Pinaceae), an endangered and endemic species in China.中国濒危特有物种**(松科)**的叶绿体全基因组特征分析
Mitochondrial DNA B Resour. 2018 Oct 29;3(2):1195-1197. doi: 10.1080/23802359.2018.1519381.
2
Fossils matter: improved estimates of divergence times in Pinus reveal older diversification.化石很重要:对松属植物分化时间的改进估计揭示了更古老的多样化过程。
BMC Evol Biol. 2017 Apr 4;17(1):95. doi: 10.1186/s12862-017-0941-z.
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
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